Closed rohith2011 closed 3 weeks ago
@rohith2011 I had the same issue before during my work, try to change the blur: true
in your config it will make further smoothing to your output. If possible increase your overlap
size, the optimal would be ranging from 0.3 - 0.5
. And also for futher info look into this Supplementary Figure 4. Attention heatmap visualization using varying degrees of overlap.This would do the job perfectly.
I have been using the tif images to create the heatmaps for my images, Below is the configuration that I am using.
And here I tried to change the following settings majorly - patch_size, overlap, patch_level, blur.
But still the heatmap output is like patches insted of the smooth heatmaps.
Any help and insights on how to get a smooth heatmap would be greatly appriciated.
Thanks.