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mahmoodlab / CLAM

Open source tools for computational pathology - Nature BME
http://clam.mahmoodlab.org
GNU General Public License v3.0
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saving coords without images? #44

Closed gabemarx closed 3 years ago

gabemarx commented 3 years ago

Hello!

Thank you for the great repo!

I was wondering if you recommend a way to save the patches file with just the coords. I am only using the coordinates for my project and the images take up too much memory.

Thanks so much! Gabe

fedshyvana commented 3 years ago

yes - the new fast patching pipeline that i updated on March 1st only saves coords, which saves storage but also is much faster if you don't need to save images.

fedshyvana commented 3 years ago

It’s already on updated on github, you just have to download/pull the latest version.

On Mon, Mar 29, 2021 at 2:30 PM gabemarx @.***> wrote:

great! how do I access that?

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