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mahmoodlab / CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
http://clam.mahmoodlab.org
GNU General Public License v3.0
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patch black box problem. #84

Closed cook-kuk closed 2 years ago

cook-kuk commented 2 years ago

Thank you for open-sourcing the code of the paper.

I want to make a model using TCGA. However, When i make patch, block box is made. So a lot of image patches is disappeared.

image

fedshyvana commented 2 years ago

I think this is due to the issue described at the bottom of https://github.com/mahmoodlab/CLAM/blob/master/docs/INSTALLATION.md. Should be solved if you upgrade your pixman library.

fedshyvana commented 2 years ago

Also see here: https://github.com/mahmoodlab/CLAM/issues/13. I think pixman has been updated in conda so you can try https://anaconda.org/anaconda/pixman.

cook-kuk commented 2 years ago

Thank you for fast response.