One Xenium dataset on human breast cancer not in the database

mahmoodlab / HEST

HEST: Bringing Spatial Transcriptomics and Histopathology together

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One Xenium dataset on human breast cancer not in the database #51

Closed kennethahah closed 4 days ago

kennethahah commented 6 days ago

From the meta data hf://datasets/MahmoodLab/hest/HEST_v1_0_2.csv, I can't find the Xenium data published by 10X genomics on 2023-04-18.

Do you have any concern not include this data into the database?

guillaumejaume commented 6 days ago

I think it's a duplicate with a slightly different gene panel as https://www.10xgenomics.com/datasets/ffpe-human-breast-with-pre-designed-panel-1-standard

guillaumejaume commented 6 days ago

Recent ones will be part of the next release. Stay tuned.

pauldoucet commented 6 days ago

It should be a duplicate of TENX97, they both use the same 'hBreast_v1_AddOn100g' gene panel and tissue section, the only difference seems to be the software version.