About TCGA data - Githubissues

mahmoodlab / Patch-GCN

Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

http://mahmoodlab.org

GNU General Public License v3.0

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About TCGA data #18

Closed genhao3 closed 2 years ago

genhao3 commented 2 years ago

With regard to the TCGA data, I would like to know whether the .svs file used in the experiment is a Tissue Slide or a Diagnostic Slide? Because I found that there are two kinds of slide images of TCGA, namely Tissue Slide and Diagnostic Slide. Also, I can't find GBMLGG, GBMLGG equals GBM?

Richarizardd commented 2 years ago

We used only diagnostic slides for each case in TCGA.
GBMLGG is a combination of two cohorts: GBM and LGG.