Trouble with Patch retrieval with kather100k dataset

mahmoodlab / SISH

Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering

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Trouble with Patch retrieval with kather100k dataset #7

Closed dsumigar closed 11 months ago

dsumigar commented 11 months ago

I am running into this error in build_index_patch.py when trying to perform the patch retrieval experiment with the kather100k colon dataset.

raise OpenSlideUnsupportedFormatError("Unsupported or missing image file") openslide.lowlevel.OpenSlideUnsupportedFormatError: Unsupported or missing image file

I have organized the patches of the kather dataset which come as .tif files into the appropriate data structure. Do you have any suggestions on how I can get this to run?

Thank you.

dsumigar commented 11 months ago

I have fixed the issue.