mahulchak / quickmerge

A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
GNU General Public License v3.0
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Is there any problem to use quickmerge and give in input a previous output of quickmerge? #59

Closed phrh closed 4 years ago

phrh commented 4 years ago

Hello, I am getting the following error. Do you have any idea what could it be?

t0 ./quickmerge 1 -d 2 VdC07.denovo3.diana.rq.delta 3 -q 4 MUMmer3.23/vert_JR2.fasta 5 -r 6 merged_quickmerge.VdC07.racon.filtered.flye.canu.fasta 7 -hco 8 5.0 9 -c 10 1.5 11 -l 12 300000 13 -ml 14 5000 15 -p 16 quickmerge.VdC07.denovo3.diana contig_76_LN:i:3793030_RC:i:109332_XC:f:1.000000 contig_76_LN:i:3793030_RC:i:109332_XC:f:1.000000 1 CP009078.1 1
contig_84_LN:i:3323759_RC:i:77622_XC:f:1.000000 CP009082.1 1 contig_84_LN:i:3323759_RC:i:77622_XC:f:1.000000 1
terminate called after throwing an instance of 'std::out_of_range' what(): basic_string::substr: __pos (which is 2348023) > this->size() (which is 0) ./quickmerge_script.sh: line 9: 480247 Aborted (core dumped) ./quickmerge -d $1.rq.delta -q $3 -r $2 -hco 5.0 -c 1.5 -l 300000 -ml 5000 -p quickmerge.$1