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mahulchak / svmu

A program to call variants from genome alignment
GNU General Public License v3.0
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The meaning of CNV types ? #13

Closed Boer223 closed 4 years ago

Boer223 commented 4 years ago

Hi,

Thank you for your SVMU tools. When checking the svmu results of sv.txt, I can't understand the meaning of CNV types, such as CNV-Q, CNV-R, nCNV-Q and nCNV-R.

Can you explain the detail meaning of these CNV types?

Thank you in advance!

mahulchak commented 4 years ago

Hi, CNV-Q = more copies in the query genome (query is in the mummer terminology) CNV-R = more copies in reference nCNV-Q = >2 copies in query nCNV-R = >2 copies in reference

Boer223 commented 4 years ago

OK. Thank you.

From Chipcui’s iPhone SE

在 2020年8月8日，下午12:59，Mahul Chakraborty notifications@github.com 写道：

 Hi, CNV-Q = more copies in the query genome (query is in the mummer terminology) CNV-R = more copies in reference nCNV-Q = >2 copies in query nCNV-R = >2 copies in reference

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