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mahulchak / svmu

A program to call variants from genome alignment
GNU General Public License v3.0
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lastz or Mummer #14

Open liufy11 opened 4 years ago

liufy11 commented 4 years ago

Hello mahulchak ! In the latest version , you use the alignment result of both mummer and lastz. But when the alignment result is different between these two softwares . which one is used to detect SV ?

mahulchak commented 4 years ago

Hi, SVMU gives preference to MUMmer because I am yet to figure out the best way to resolve incongruence between the two aligners.

On Sun, Jul 26, 2020 at 6:45 AM liufy11 notifications@github.com wrote:

Hello mahulchak ! In the latest version , you use the alignment result of both mummer and lastz. But when the alignment result is different between these two softwares . which one is used to detect SV ?

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