mahulchak / svmu

A program to call variants from genome alignment
GNU General Public License v3.0
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install issue #24

Open hgz2021 opened 3 years ago

hgz2021 commented 3 years ago

When I run step "make", I get error like this ![Uploading error.png…]() g++ -g -Wall -std=c++0x -c svlib.cpp svlib.cpp:4: error: expected nested-name-specifier before ‘chroms’ svlib.cpp:4: error: ‘chroms’ has not been declared svlib.cpp:4: error: expected ‘;’ before ‘=’ token svlib.cpp:4: error: expected unqualified-id before ‘=’ token svlib.cpp:5: error: expected nested-name-specifier before ‘ccov’ svlib.cpp:5: error: ‘ccov’ has not been declared svlib.cpp:5: error: expected ‘;’ before ‘=’ token svlib.cpp:5: error: expected unqualified-id before ‘=’ token svlib.cpp:6: error: expected nested-name-specifier before ‘vq’ svlib.cpp:6: error: ‘vq’ has not been declared svlib.cpp:6: error: expected ‘;’ before ‘=’ token svlib.cpp:6: error: expected unqualified-id before ‘=’ token svlib.cpp:16: error: ‘ccov’ does not name a type svlib.cpp: In function ‘void findInnie(std::vector<mI, std::allocator >&, mI&)’: svlib.cpp:39: warning: comparison between signed and unsigned integer expressions svlib.cpp: In function ‘void findInnieQ(std::vector<mI, std::allocator >&, mI&)’: svlib.cpp:93: warning: comparison between signed and unsigned integer expressions svlib.cpp: In function ‘void findInnieLast(std::vector<mI, std::allocator >&, mI&)’: svlib.cpp:132: warning: comparison between signed and unsigned integer expressions svlib.cpp: At global scope: svlib.cpp:147: error: variable or field ‘storeCords’ declared void svlib.cpp:147: error: ‘ccov’ was not declared in this scope svlib.cpp:147: error: ‘masterRef’ was not declared in this scope svlib.cpp:147: error: ‘ccov’ was not declared in this scope svlib.cpp:147: error: ‘masterQ’ was not declared in this scope svlib.cpp:147: error: expected primary-expression before ‘&’ token svlib.cpp:147: error: ‘mi’ was not declared in this scope make: *** [svlib.o] Error 1

mahulchak commented 3 years ago

what is your compiler?