How to map node id to corresponded allele id?

maickrau / GraphAligner

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How to map node id to corresponded allele id? #85

Closed yipukangda closed 1 year ago

yipukangda commented 1 year ago

Hi,

I construct a pan-genome with pggb from an allele database, then align a simulated data to this PFA data, and get result gaf file.

if I want to fast map the path match (such as, >9705>9706>9707>9709>9711>9712) to the most possible allele id(such as 9705 -> genotype_3, 9706-> genotype_3, 9707-> genotype_5), how could I achieve this.

thanks

jjuhyunkim commented 4 months ago

Hi ! Did you resolve your issue? How did you do it? I have the same issue.