Open asylvz opened 11 months ago
Hi, could you upload the graph and the read?
With lower bandwidth it got resolved but I cannot regenerate this issue currently. I will let you know if I see this again but now I have a similar issue with a different sample:
GraphAligner -g hprc-v1.1-mc-chm13.gfa -f HG02953.vrk-ps-sseq.asm-hap2.fasta.gz -a HG02953_hap2.gaf -t 16 --
bandwidth 15 --multimap-score-fraction 0.99 --precise-clipping 0.9 --min-alignment-score 2000 --seeds-mem-count
100000 --seeds-mxm-windowsize 10000 --seeds-mxm-cache-prefix snake_alignments/ga_prefix
And the error:
src/GraphAligner.h:647: Assertion 'trace.trace[i].DPposition.seqPos == trace.trace[i-1].DPposition.seqPos ||
trace.trace[i].DPposition.seqPos == trace.trace[i-1].DPposition.seqPos+1' failed. Read: haplotype2-0000154. Seed:
0+,0,0,0
Yes, I also found a lot of assertions, I don’t know how to deal with it. I am using GraphAlinger v1.0.19 version
Hi,
I'm trying to align an assembly to minigraph cactus using the command below. However I get the following error:
However, this is the error I get: