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maickrau / ribotin

MIT License
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assertionerror getHeavyPath #9

Open ptrebert opened 1 year ago

ptrebert commented 1 year ago

see slack for details

    113 getting consensus
    114 ribotin-verkko: src/ClusterHandler.cpp:719: Path getHeavyPath(const GfaGraph&): Assertion `visited.count(pre.first) == 0' failed.
    115 /bin/bash: line 1: 59355 Aborted                 ribotin-verkko --sample-name NA19331 -x human -i  ...
jiadong324 commented 6 months ago

@ptrebert Hi Peter, is your issue solved?

I always get this error 

ribotin-verkko version bioconda 1.3
checking for MBG
/software/modules-sw/ribotin/1.3/Linux/CentOS7/x86_64/bin/MBG
checking for GraphAligner
/software/modules-sw/ribotin/1.3/Linux/CentOS7/x86_64/bin/GraphAligner
checking for liftoff
/software/modules-sw/ribotin/1.3/Linux/CentOS7/x86_64/bin/liftoff
do UL analysis: yes
output prefix: /assembler_acros/verkko_v2/NA12877/ribotin
terminate called after throwing an instance of 'std::logic_error'
  what():  basic_string: construction from null is not valid
Aborted

It seems to be the problem of reading arguments. Would it be possible for you to paste the command here?