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main-educational / brain_encoding_decoding

A jupyter book on brain decoding using functional magnetic resonance imaging
https://main-educational.github.io/brain_encoding_decoding/intro.html
MIT License
8 stars 11 forks source link

Crazy dependencies #16

Closed bthirion closed 1 year ago

bthirion commented 1 year ago

Having to install pytorch and TF altogther is really too much. Actually, simple sklearn covers 90% of the cases.

htwangtw commented 1 year ago

Agreed, and every once in a while, i won't be able to build a environment. @srastegarnia the pytorch/TF requirement is related to your part, from what I remembered. Can you please look into simplifying for the tutorial?

PeerHerholz commented 1 year ago

Hi folks,

thx for bringing this up. I agree, it's quite a bit. I think it also came from the fact that until now the decoding and encoding part were combined. Thus, if we have everything together and tested, we should definitely evaluate and reduce the environment!

Thanks again, cheers, Peer

bthirion commented 1 year ago

All right. If it is of any help, the most problematic one to install is torch-sparse (pip install currently fails on my bow with a standard Ubuntu...)

PeerHerholz commented 1 year ago

Hi @bthirion,

sorry to hear that you're having problems with the environment! I submitted a PR (#17) that should fix library/version related problems. At least it worked for me when creating a new environment with python==3.8 and then running pip install -r binder/requirements.txt. Please let me know if I can be of help re this.

Best, Peer

PeerHerholz commented 1 year ago

Hi everyone,

as the dependency is more or less addressed, I'm going to close this issue. However, please feel free to reopen it if needed.

Cheers, Peer