Merge gvcfs clikt command

tcasstevens commented 5 months ago

Description

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Type of change

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[ ] CHANGE (fix or feature that would cause existing functionality to not work as expected)
[X] FEATURE (non-breaking change which adds functionality)
[ ] BUGFIX (non-breaking change which fixes an issue)
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[ ] I have performed a self-review of my code
[ ] I have commented my code, particularly in hard-to-understand areas
[ ] I have updated relevant documentation

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Added MergeGVCFs Clikt Command

codecov[bot] commented 5 months ago

Codecov Report

Attention: Patch coverage is 63.63636% with 4 lines in your changes missing coverage. Please review.

Project coverage is 83.70%. Comparing base (767128b) to head (c7e7b77). Report is 2 commits behind head on main.

Files	Patch %	Lines
...n/kotlin/net/maizegenetics/phgv2/cli/MergeGVCFs.kt	70.00%	2 Missing and 1 partial :warning:
src/main/kotlin/net/maizegenetics/phgv2/cli/Phg.kt	0.00%	1 Missing :warning:

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #170 +/- ## ========================================== - Coverage 83.73% 83.70% -0.03% ========================================== Files 75 76 +1 Lines 4802 4812 +10 Branches 788 790 +2 ========================================== + Hits 4021 4028 +7 - Misses 496 498 +2 - Partials 285 286 +1 ```

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lynnjo commented 4 months ago

Needs a junit . Perhaps you ran out of time before leaving and plan to implement when you're back on line.

maize-genetics / phg_v2