Samples list command

[lynnjo]

Description

Add a ListSamples command for users to see which samples are contained in their AGC compressed file, as well as their tiledb hvcf and gvcf datasets

Type of change

What type of changes does your code introduce? Put an x in boxes that apply.

• [ ] CHANGE (fix or feature that would cause existing functionality to not work as expected)
• [x] FEATURE (non-breaking change which adds functionality)
• [ ] BUGFIX (non-breaking change which fixes an issue)
• [ ] ENHANCEMENT (non-breaking change which improves existing functionality)
• [ ] NONE (if none of the other choices apply. Example, tooling, build system, CI, docs, etc.)

Checklist:

• [x] I have performed a self-review of my code
• [x] I have commented my code, particularly in hard-to-understand areas
• [ ] I have updated relevant documentation

Changelog entry

Please add a one-line changelog entry below. This will be copied to the changelog file during the release process.

Added ListSamples command

[codecov[bot]]

Codecov Report

Attention: Patch coverage is 92.45283% with 4 lines in your changes missing coverage. Please review.

Project coverage is 82.84%. Comparing base (c647430) to head (2987691). Report is 12 commits behind head on main.

Files with missing lines	Patch %	Lines
.../kotlin/net/maizegenetics/phgv2/cli/ListSamples.kt	94.23%	0 Missing and 3 partials :warning:
src/main/kotlin/net/maizegenetics/phgv2/cli/Phg.kt	0.00%	1 Missing :warning:

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #224 +/- ## ========================================== + Coverage 82.72% 82.84% +0.11% ========================================== Files 77 78 +1 Lines 5060 5112 +52 Branches 838 850 +12 ========================================== + Hits 4186 4235 +49 Misses 560 560 - Partials 314 317 +3 ``` | [Flag](https://app.codecov.io/gh/maize-genetics/phg_v2/pull/224/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=maize-genetics) | Coverage Δ | | |---|---|---| | [](https://app.codecov.io/gh/maize-genetics/phg_v2/pull/224/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=maize-genetics) | `82.84% <92.45%> (?)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=maize-genetics#carryforward-flags-in-the-pull-request-comment) to find out more.

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