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makovalab-psu / DiscoverY

K-mer based classifier for Y-contig identification from Whole Genome Assemblies
MIT License
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DSK script creates different filename than classify_ctgs wants #6

Open rsharris opened 5 years ago

rsharris commented 5 years ago

The result of run_dsk_Linux.sh is a file named kmers_from_reads.

In classify_ctgs.py, classify_fm_male_mode() needs this file, but expects it to be named kmers_from_male_reads.

I guess there's nothing wrong with that per se, but it does seem odd. Moreover, the user who fails to realize that can lose 12+ hours while the female bloom filter is being built, before discoverY discovers that kmers_from_male_reads doesn't exist.