The methods section of the DiscoverY manuscript says that kmers occurring fewer than three times were filtered out. But the DSK scripts included in this repository set the abundance limit to zero -- no filtering.
The README ought to mention kmer filtering and advise the user how to accomplish that.
The methods section of the DiscoverY manuscript says that kmers occurring fewer than three times were filtered out. But the DSK scripts included in this repository set the abundance limit to zero -- no filtering.
The README ought to mention kmer filtering and advise the user how to accomplish that.