G-quadruplexes gee_kwad.py

makovalab-psu / nonB-RegVar

This repository contains all the computational tools used in our manuscript "Non-B DNA: The major contributor to small- and large-scale variation in nucleotide substitution frequencies across the genome".

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G-quadruplexes gee_kwad.py #1

Open GuangyaoL opened 3 years ago

GuangyaoL commented 3 years ago

hi，Wilfried M. Guiblet： The work is nice.I want to learn how to split G4 stem and loops,but it is not supplementary tools for gee_kwad.py in you jupyter books,can you tell us about this tools . Thank you $37V({STJISGWN3ICV$L_K4M$

wilfriedguiblet commented 3 years ago

Hi Guangyaol,

Thank you very much for your feedback. gee_kwad.py was written by https://github.com/rsharris. I added a copy to this repository.

Please let me know if you encounter any more problems!

GuangyaoL commented 3 years ago

Thank you very much for your answer. I have another question, how did you get quadron. sgdp_motif_vs_control_iwtomics_center_0.01. RData,that used in drawing Fig.2. If you can get the code of this part, could you please share it with me? Thank you.