Closed ghost closed 11 years ago
After standard molecular dynamics simulation we can use ProDy to perform PCA.
Lets try this one: http://www.csb.pitt.edu/prody/examples/dynamics/pca/pca_nmr.html
We should check if file project_name+".nmd" can be opened by NMWiz
http://www.csb.pitt.edu/prody/tutorial/nmwiz.html
Yes it can and with calpha patch it looks descent.
After standard molecular dynamics simulation we can use ProDy to perform PCA.