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malariagen / ag1000g-phase3-data-paper

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phase 3 crosses meta data - release bucket version incorrect #32

Closed cclarkson closed 3 years ago

cclarkson commented 3 years ago

Crosses meta data in the release bucket does not match the file here - the 'cross' column is missing.

update There is some confusion here. @hardingnj, the file you linked in your email (see above) is actually the phase2 crosses meta data, I don't know what is doing in vector_ops - we really need to put the phase in the file names!

There is a file in vector_ops, however, that looks more helpful - I will see how this compares with the crosses genotypes for number of samples.

Either way, we still don't have an up to date cross meta data file in the release bucket.

hardingnj commented 3 years ago

https://storage.cloud.google.com/vo_agam_staging/v3/metadata/crosses/samples.crosses.csv?authuser=1

hardingnj commented 3 years ago

re https://github.com/malariagen/vector-ops/pull/1256

cclarkson commented 3 years ago

fixed via malariagen/vector-ops#1256