malariagen / ag1000g-phase3-data-paper

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WIP - UMAP Figure - FOR DISCUSSION #58

Closed cclarkson closed 3 years ago

cclarkson commented 3 years ago

This notebook shows a few different ways we might want to present dimensionality reduction analyses.

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hardingnj commented 3 years ago

Thanks Chris- will take a look asap.

cclarkson commented 3 years ago

@hardingnj and @leehart - tis Mayotte which is the mega outlier population in UMAP.

I've also added a couple of example interactive 3D UMAP plots (they're the html files), they're kinda cool, but don't help a whole lot!

If this is cool we can just merge it as it to refer back to later?