Implement Population Branch statistic (PBS)

malariagen / malariagen-data-python

Analyse MalariaGEN data from Python

https://malariagen.github.io/malariagen-data-python/latest/

MIT License

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Implement Population Branch statistic (PBS) #293

Open sanjaynagi opened 2 years ago

sanjaynagi commented 2 years ago

Reminder to implement a pbs_gwss()and plot_pbs_gwss() functions. Can be nice to contrast between populations.

Would take 3 cohort_queries as arguments.

alimanfoo commented 2 years ago

Sounds good. Probably also worth adding a simple Fst version as well, i.e., genome-wide Fst between a pair of cohorts. Guess we could call that fst_gwss() and plot_fst_gwss() for consistency.