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malariagen / malariagen-data-python

Analyse MalariaGEN data from Python
https://malariagen.github.io/malariagen-data-python/latest/
MIT License
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pytest error #438

Closed jonbrenas closed 10 months ago

jonbrenas commented 10 months ago

I was running poetry run pytest -v and there are 4 errors (but they are actually 2 errors twice):

I know there is ongoing work on funestus from Ghana and that the metadata for AG1000G-GM-B was updated by @ahernank so I think some functions are looking at old cohort definitions. Are these known errors? Have I forgotten a step during setup that causes them?

ahernank commented 10 months ago

Yes, we did update the tests in #417 to solve the issues related to the change of year on AG1000G-GM-B; so I would hope this would be addressed now.

Wondering if there is come local cache that could be affecting things?

ahernank commented 10 months ago

Lee has also addressed the first issue related to the cohort query in #424.

jonbrenas commented 10 months ago

Thanks @ahernank. I'll try to find why the cache is pulling my leg and how to clear it.