Review API docs & refactor gene CNV frequencies functions

malariagen / malariagen-data-python

Analyse MalariaGEN data from Python

https://malariagen.github.io/malariagen-data-python/latest/

MIT License

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Review API docs & refactor gene CNV frequencies functions #444

Closed alimanfoo closed 10 months ago

alimanfoo commented 10 months ago

Reviews all API docs and adds sections for analysis functions, resolves #442
Updates Ag3 and Af1 repr functions to point to new docs URLs
Moves the functions relating to computing modal copy number in genes up from Ag3 to Anopheles so these functions are also available for Af1

codecov[bot] commented 10 months ago

Codecov Report

Merging #444 (c325682) into master (f8ec935) will not change coverage. The diff coverage is n/a.

@@           Coverage Diff           @@
##           master     #444   +/-   ##
=======================================
  Coverage   97.50%   97.50%           
=======================================
  Files          26       26           
  Lines        2086     2086           
=======================================
  Hits         2034     2034           
  Misses         52       52

Files	Coverage Δ
malariagen_data/anoph/base.py	`93.46% <ø> (ø)`
malariagen_data/anoph/genome_sequence.py	`92.85% <ø> (ø)`

alimanfoo commented 10 months ago

Hi @leehart, please give this one a 👀 ta 🙂