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malariagen / malariagen-data-python

Analyse MalariaGEN data from Python
https://malariagen.github.io/malariagen-data-python/latest/
MIT License
13 stars 23 forks source link

Improve performance applying site filters to SNP calls #464

Closed alimanfoo closed 9 months ago

alimanfoo commented 9 months ago
alimanfoo commented 9 months ago

Down to ~10s - https://colab.research.google.com/drive/1RuJHkFTYXeDkrNuH60MfPynC1PBM8GEH?usp=sharing

alimanfoo commented 9 months ago

Advantage of spinners, when you start using them you start finding unexpected parts of the code that are running slower than you thought :)