Closed alimanfoo closed 8 months ago
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Going to merge soon here as the njt feature is needed for an analysis project, but there's a lot going on in this PR so very happy to revisit anything here.
plot_njt()
for plotting neighbour-joining trees.biallelic_diplotype_pairwise_distances()
for computing a distance matrix.plot_haplotype_clustering()
,plot_pca_coords()
andplot_pca_coords_3d()
to use common code for setting up plotting colors and symbols where possible.snp_calls()
.tqdm_class
parameter to allow overriding what type of tqdm output is used for progress.