Closed alimanfoo closed 8 months ago
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Towards #366, refactor handling of virtual contigs.
The main benefit here is that it allows testing using simulated data.
Also configuration of virtual contigs is more flexible, a virtual contig can be made of any number and combination of reference genome contigs.
Also here a
haplotype_sites()
function is surfaced in the public API - it's required internally within G123 but moving to public API as could be generally useful.