Add clip_min parameter for Fst GWSS analyses

malariagen / malariagen-data-python

Analyse MalariaGEN data from Python

https://malariagen.github.io/malariagen-data-python/latest/

MIT License

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Add clip_min parameter for Fst GWSS analyses #544

Open sanjaynagi opened 1 month ago

sanjaynagi commented 1 month ago

Resolves #543.

I have added a parameter, clip_min, which allows the user to set an optional minimum value for the Fst GWSS functions. Previously they were automatically clipped to 0-1, which is confusing when looking at Fst data between relatives.

leehart commented 4 weeks ago

Just to note that there is a minor linting failure, and other CI test failures due to not being able to authenticate with Google Cloud from a fork. Also needs an update from the master branch.