Open alimanfoo opened 3 months ago
Can't yet reproduce this failure or see exactly where it's coming from:
@parametrize_with_cases("fixture,api", cases=".")
def test_g123_calibration(fixture, api: AnophelesG123Analysis):
# Set up test parameters.
all_sample_sets = api.sample_sets()["sample_set"].to_list()
window_sizes = np.random.randint(100, 500, size=random.randint(2, 5)).tolist()
window_sizes = sorted([int(x) for x in window_sizes])
g123_params = dict(
contig=random.choice(api.contigs),
sites=random.choice(api.phasing_analysis_ids),
sample_sets=[random.choice(all_sample_sets)],
min_cohort_size=10,
window_sizes=window_sizes,
)
# Run function under test.
calibration_runs = api.g123_calibration(**g123_params)
# Check results.
assert isinstance(calibration_runs, dict)
assert len(calibration_runs) == len(window_sizes)
assert list(calibration_runs.keys()) == [str(win) for win in window_sizes]
for w in window_sizes:
x = calibration_runs[str(w)]
assert isinstance(x, np.ndarray)
assert np.all(x >= 0)
assert np.all(x <= 1)
# Run plotting function.
fig = api.plot_g123_calibration(**g123_params, show=False)
assert isinstance(fig, bokeh.models.Plot)
Seeing this test failure after merging unrelated changes to master.