Add plink converter function (shadow PR)

malariagen / malariagen-data-python

Analyse MalariaGEN data from Python

https://malariagen.github.io/malariagen-data-python/latest/

MIT License

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Add plink converter function (shadow PR) #584

Open alimanfoo opened 2 months ago

alimanfoo commented 2 months ago

This PR shadows #515 to get GitHub actions running.

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jonbrenas commented 2 weeks ago

Tristan has included a notebook in his PR to test the PLINK converter functions. The main issue is that it creates a .bed file which raises issues with correct paths (there also seems to be a problem with authentication when he ran it locally but that’s neither here nor there). I think the best solution is to stop tracking the notebook. @alimanfoo, @ahernank, @cclarkson, @leehart, any opinion?