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malariagen / malariagen-data-python

Analyse MalariaGEN data from Python
https://malariagen.github.io/malariagen-data-python/latest/
MIT License
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Sort gene annotations by contig and start coordinate in `genome_features()` #649

Closed sanjaynagi closed 3 weeks ago

sanjaynagi commented 3 weeks ago

To resolve #558 .

Currently the funestus GFF is not properly sorted, and so when doing advanced diplotype clustering, the genes are displayed in the wrong order, making it difficult to infer patterns and spans of CNVs.

Now we sort the GFF by contig, start in the genome_features() function.