Joint haplotype calls - Githubissues

malariagen / pf-haploatlas

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Joint haplotype calls #26

Open Chiyun-Lee opened 2 months ago

Chiyun-Lee commented 2 months ago

Some DHPS/DHFR joint phenotypes confer S-P/IPTp resistance. Ability to analyse phenotypes across genes jointly would be valuable here, though if there is just this one usecase, it may be easier to just hardcode a special DHPS/DHFR entry

Chiyun-Lee commented 2 months ago

Here are some additional usecases:

FD D193Y – 0% PNG, 100% Papua Indonesia. ART-R background
EXO – E415G/K614N rapidly increased in AS-SE-E. ART-R background