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malariagen / pipelines

Pipelines for processing malaria parasite and mosquito genome sequence data.
MIT License
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Mosquito short read alignment pipeline - dockerfiles #11

Closed alimanfoo closed 4 years ago

alimanfoo commented 4 years ago

Add dockerfiles for all the tools needed by the vector short read alignment pipeline version 1.1.1.

Part of #2, breaking out as separate issue for convenience.

alimanfoo commented 4 years ago

Hi folks, given that dockerfiles might be reused across multiple pipelines, shall we put these in a root level /dockerfiles directory in this repo?

tnguyensanger commented 4 years ago

Sure. We have a whole bunch of dockerfiles used in PF7 and for general cromwell/sanger access testing under: https://gitlab.com/malariagen/gsp/executor/-/tree/master/Docker.

We can move them over.

I'm sure the NIHR amplicon sequencing folks have their own set of docker files.

JonKeatley112 commented 4 years ago

The Dockerfiles i moved to executor are the ones from amplicon

alimanfoo commented 4 years ago

Cool, thanks @tnguyensanger, @JonKeatley112. The specific versions of the tools we need are in the spec.