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malariagen / pipelines

Pipelines for processing malaria parasite and mosquito genome sequence data.
MIT License
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Modify cohort_vcf_to_zarr.py to optionally output a zipped zarr. #82

Closed gbggrant closed 3 years ago

gbggrant commented 3 years ago

Modify cohort_vcf_to_zarr.py to optionally output a zipped zarr. Pass that parameter (allow zip) to the cohort_vcf_to_zarr task in the WDL. Improve the ability to pass runtime parameters to gcp tasks.

gbggrant commented 3 years ago

Still have duplicate copies of the python scripts in the 'scripts' directory and in the docker subdirectories (where they need to be for docker to work). Okay to delete from the scripts directory @alimanfoo ?