malariagen / vector-data

Documentation, discussion forum and issue tracker for malaria vector genomic data released by MalariaGEN.

https://malariagen.github.io/vector-data/

7 stars 4 forks source link

vector-data/ag3/download #46

Open utterances-bot opened 2 years ago

utterances-bot commented 2 years ago

Ag3 data downloads — MalariaGEN vector data user guide

https://malariagen.github.io/vector-data/ag3/download.html

jdaron commented 2 years ago

Hi, I have a quick question regarding the downloading of the FASTQ files. I haven't been able to access the fastq file of some samples, such as the sample "AB0333-C" and the ERR id "ERR1702369".

I tried this command wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR1702/ERR1702369/ERR1702369_1.fastq.gz but the file doesn't exist for this path.

Thanks in advance for your answer. Josquin

alimanfoo commented 1 year ago

Hi @jdaron, apologies for the very late reply. If it's still useful to know, it looks like the FTP URLs may have changed. E.g., for the run ERR1702369 the FASTQ URLs are currently shown as:

ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR170/009/ERR1702369/ERR1702369_1.fastq.gz
ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR170/009/ERR1702369/ERR1702369_2.fastq.gz