How do you translate a raw data file of MALDI into h5ad object, which can be recognized by scanpy?

maldiUKY / HDC-SC

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How do you translate a raw data file of MALDI into h5ad object, which can be recognized by scanpy? #1

Open OMIC-coding opened 11 months ago

OMIC-coding commented 11 months ago

Very elegant work, but I think you omitted a key procedure about how to translate a raw data file of MALDI (usually as imzML format)into h5ad object, which can be recognized by scanpy. Could you complement with that?

OMIC-coding commented 11 months ago

Sorry, I made a mistake. I noticed that you have already provided several specific functions in your scripts to do the data format translate work. Could you please just provided a typical raw data file for me to understand your code based on the content of it? Thanks a lot!!!