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malhamdoosh / EGSEA

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
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egsea.ora fails when 'title' has spaces #1

Closed malhamdoosh closed 7 years ago

malhamdoosh commented 7 years ago

To fix this error message when running egsea.ora with the parameter 'title' contains white spaces

Error in egsea.main(voom.results, contrasts, gs.annots, baseGSEAs, combineMethod, : logFC should be a matrix object with column names equal to the (column) names of the argument 'contrast'.

It mainly occurs because spaces and special characters are removed from contrast names.