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malonge / RaGOO

RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
MIT License
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RuntimeError: Failed #81

Open luo123675 opened 3 years ago

luo123675 commented 3 years ago

Fri Apr 2 10:42:44 2021 --- Running : /public/home/miniconda3/bin/minimap2 -k19 -w19 -t3 ..//public/home/ragoo/GCF_000298735.2_Oar_v4.0_genomic.fa ..//public/home/ragoo/hu.contig.fa > contigs_against_ref.paf 2> contigs_against_ref.paf.log Traceback (most recent call last): File "/public/home/soft/RaGOO-master/build/scripts-3.8/ragoo.py", line 585, in run(cmd) File "/public/home/miniconda3/lib/python3.8/site-packages/RaGOO-1.1-py3.8.egg/ragoo_utilities/utilities.py", line 25, in run RuntimeError: Failed : miniconda3/bin/minimap2 -k19 -w19 -t3 ..//public/home/ragoo/GCF_000298735.2_Oar_v4.0_genomic.fa ..//public/home/ragoo/hu.contig.fa > contigs_against_ref.paf 2> contigs_against_ref.paf.log

This is the contents of my error file can you help me ?

luo123675 commented 3 years ago

and why [ERROR] failed to open file '..//public/home/ragoo/reference_genomic.fa'?

thank you very much

malonge commented 3 years ago

Hi there,

RaGOO is no longer supported. Please use RagTag instead.