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malonge / RagTag

Tools for fast and flexible genome assembly scaffolding and improvement
MIT License
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about paf2delta #144

Open 1085268616 opened 1 year ago

1085268616 commented 1 year ago

Could you help me? I don't know how to solve it.

ragtag.py paf2delta /home/zhangzeyu/ragtag_output/jy_ragtag.scaffold.asm.paf Traceback (most recent call last): File "/home/zhangzeyu/anaconda3/bin/ragtag_paf2delta.py", line 183, in paf2delta() File "/home/zhangzeyu/anaconda3/bin/ragtag_paf2delta.py", line 156, in paf2delta raise ValueError("PAF file must contain a CIGAR string. Use 'minimap2 -c'") ValueError: PAF file must contain a CIGAR string. Use 'minimap2 -c'

1085268616 commented 1 year ago

And I use : ragtag.py scaffold RSA_r1.0 jy.output.fasta I only got three files: jy_ragtag.scaffold.asm.paf jy_ragtag.scaffold.err jy_ragtag.scaffold.asm.paf.log. Is this normal?