malramsay64 / statdyn-analysis

Collection of tools for the statistical dynamics analysis of Molecular Dynamics trajectories.
MIT License
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chore(deps): bump scipy from 1.2.1 to 1.3.0 #83

Closed dependabot-preview[bot] closed 5 years ago

dependabot-preview[bot] commented 5 years ago

Bumps scipy from 1.2.1 to 1.3.0.

Release notes *Sourced from [scipy's releases](https://github.com/scipy/scipy/releases).* > SciPy 1.3.0 Release Notes > ================ > > SciPy 1.3.0 is the culmination of 5 months of hard work. It contains > many new features, numerous bug-fixes, improved test coverage and better > documentation. There have been some API changes > in this release, which are documented below. All users are encouraged to > upgrade to this release, as there are a large number of bug-fixes and > optimizations. Before upgrading, we recommend that users check that > their own code does not use deprecated SciPy functionality (to do so, > run your code with ``python -Wd`` and check for ``DeprecationWarning`` s). > Our development attention will now shift to bug-fix releases on the > 1.3.x branch, and on adding new features on the master branch. > > This release requires Python 3.5+ and NumPy 1.13.3 or greater. > > For running on PyPy, PyPy3 6.0+ and NumPy 1.15.0 are required. > > Highlights of this release > -------------------------- > > - Three new ``stats`` functions, a rewrite of ``pearsonr``, and an exact > computation of the Kolmogorov-Smirnov two-sample test > - A new Cython API for bounded scalar-function root-finders in `scipy.optimize` > - Substantial ``CSR`` and ``CSC`` sparse matrix indexing performance > improvements > - Added support for interpolation of rotations with continuous angular > rate and acceleration in ``RotationSpline`` > > > New features > ============ > > `scipy.interpolate` improvements > -------------------------------- > > A new class ``CubicHermiteSpline`` is introduced. It is a piecewise-cubic > interpolator which matches observed values and first derivatives. Existing > cubic interpolators ``CubicSpline``, ``PchipInterpolator`` and > ``Akima1DInterpolator`` were made subclasses of ``CubicHermiteSpline``. > > `scipy.io` improvements > ----------------------- > > For the Attribute-Relation File Format (ARFF) `scipy.io.arff.loadarff` > now supports relational attributes. > > `scipy.io.mmread` can now parse Matrix Market format files with empty lines. > > `scipy.linalg` improvements > ... (truncated)
Commits - [`e1e44d1`](https://github.com/scipy/scipy/commit/e1e44d12637997606b1bcc0c6de232349e11eee0) REL: SciPy 1.3.0 release commit - [`ac7dce3`](https://github.com/scipy/scipy/commit/ac7dce30999e3f0e613c564eea1876aff8fb6413) Merge pull request [#10185](https://github-redirect.dependabot.com/scipy/scipy/issues/10185) from tylerjereddy/scipy-130-rel-prep - [`e1cfc5b`](https://github.com/scipy/scipy/commit/e1cfc5b9c12db2df67559432533e429579cb3d2c) TST: fix test issue for stats.pearsonr - [`a5efdc7`](https://github.com/scipy/scipy/commit/a5efdc7637438fb7862d7fb8d7118b647e2b5628) MAINT: backport / prep for 1.3.0 - [`80b786a`](https://github.com/scipy/scipy/commit/80b786a4573d665d75ace51c75345a523c5788dd) REL: 1.3.0rc2 release commit - [`b1ff3e7`](https://github.com/scipy/scipy/commit/b1ff3e71828268e4bf3987a591a9f685a1d32aef) Merge pull request [#10155](https://github-redirect.dependabot.com/scipy/scipy/issues/10155) from tylerjereddy/backports-130rc2-may8 - [`a860f6d`](https://github.com/scipy/scipy/commit/a860f6da3e8ff0b1474f9a822ff1dcdf0c7e6335) BUG: fix linprog revised simplex docstring problem failure ([#10135](https://github-redirect.dependabot.com/scipy/scipy/issues/10135)) - [`0b4f018`](https://github.com/scipy/scipy/commit/0b4f01828db1e457c086ccdbe580c721591bca38) MAINT: update scipy-sphinx-theme - [`3d65174`](https://github.com/scipy/scipy/commit/3d65174b29a8e0a819570f7f8c40185cb11894e3) MAINT: SciPy 1.3.0 rc2 preparation - [`333c7d1`](https://github.com/scipy/scipy/commit/333c7d170602157aff2eab6a68430bf46c4bba01) REL: set version to 1.3.0rc1 - Additional commits viewable in [compare view](https://github.com/scipy/scipy/compare/v1.2.1...v1.3.0)


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codecov[bot] commented 5 years ago

Codecov Report

Merging #83 into master will decrease coverage by 0.16%. The diff coverage is n/a.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #83      +/-   ##
==========================================
- Coverage   78.59%   78.42%   -0.17%     
==========================================
  Files          18       18              
  Lines        1766     1766              
==========================================
- Hits         1388     1385       -3     
- Misses        378      381       +3
Impacted Files Coverage Δ
src/sdanalysis/read.py 82.98% <0%> (-1.25%) :arrow_down:

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dependabot-preview[bot] commented 5 years ago

Looks like scipy is up-to-date now, so this is no longer needed.