Open borexino opened 2 years ago
I ran this:
micromamba create -n picrust2 -c bioconda -c conda-forge picrust2=2.5.1
I had this:
___ __ ______ ___ ____ _____ ___ / /_ ____ _ / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/ / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ / / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/ /_/ warning libmamba 'root_prefix' set with default value: /Users/xxx/micromamba bioconda/osx-arm64 No change bioconda/noarch 4.1MB @ 1.9MB/s 2.3s conda-forge/noarch 10.2MB @ 3.0MB/s 3.7s conda-forge/osx-arm64 4.2MB @ 1.1MB/s 3.8s Encountered problems while solving: - nothing provides biom-format >=2.1.10 needed by picrust2-2.5.1-pyhdfd78af_0 The environment can't be solved, aborting the operation error libmamba Could not solve for environment specs critical libmamba UnsatisfiableError_
OR:
mamba create -n picrust2 -c bioconda -c conda-forge picrust2=2.5.1
Gives:
__ __ __ __ / \ / \ / \ / \ / \/ \/ \/ \ ███████████████/ /██/ /██/ /██/ /████████████████████████ / / \ / \ / \ / \ \____ / / \_/ \_/ \_/ \ o \__, / _/ \_____/ ` |/ ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝ mamba (1.0.0) supported by @QuantStack GitHub: https://github.com/mamba-org/mamba Twitter: https://twitter.com/QuantStack █████████████████████████████████████████████████████████████ Looking for: ['picrust2=2.5.1'] pkgs/main/osx-arm64 No change bioconda/osx-arm64 No change bioconda/noarch No change pkgs/r/noarch No change pkgs/main/noarch No change pkgs/r/osx-arm64 No change conda-forge/osx-arm64 4.2MB @ 2.3MB/s 1.9s conda-forge/noarch 10.2MB @ 3.4MB/s 3.3s Encountered problems while solving: - nothing provides biom-format >=2.1.10 needed by picrust2-2.5.1-pyhdfd78af_0
Here the issue:
conda init zsh Password: # >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<< Traceback (most recent call last): File "/opt/homebrew/anaconda3/lib/python3.9/site-packages/conda/exceptions.py", line 1129, in __call__ return func(*args, **kwargs) File "/opt/homebrew/anaconda3/lib/python3.9/site-packages/conda/cli/main.py", line 86, in main_subshell exit_code = do_call(args, p) File "/opt/homebrew/anaconda3/lib/python3.9/site-packages/conda/cli/conda_argparse.py", line 93, in do_call return getattr(module, func_name)(args, parser) File "/opt/homebrew/anaconda3/lib/python3.9/site-packages/conda/cli/main_init.py", line 50, in execute return initialize(context.conda_prefix, selected_shells, for_user, args.system, File "/opt/homebrew/anaconda3/lib/python3.9/site-packages/conda/core/initialize.py", line 119, in initialize run_plan_elevated(plan2) File "/opt/homebrew/anaconda3/lib/python3.9/site-packages/conda/core/initialize.py", line 688, in run_plan_elevated result = subprocess_call( File "/opt/homebrew/anaconda3/lib/python3.9/site-packages/conda/gateways/subprocess.py", line 100, in subprocess_call stdout, stderr = process.communicate(input=stdin) File "/opt/homebrew/anaconda3/lib/python3.9/subprocess.py", line 1134, in communicate stdout, stderr = self._communicate(input, endtime, timeout) File "/opt/homebrew/anaconda3/lib/python3.9/subprocess.py", line 1959, in _communicate input_view = memoryview(self._input) TypeError: memoryview: a bytes-like object is required, not 'str' `$ /opt/homebrew/anaconda3/bin/conda init zsh`
Can I solve somehow?
Hi @borexino - you are in need of a osx-arm64 build of biom-format, but that does not exist on the conda channels you are searching.
I ran this:
micromamba create -n picrust2 -c bioconda -c conda-forge picrust2=2.5.1
I had this:
OR:
mamba create -n picrust2 -c bioconda -c conda-forge picrust2=2.5.1
Gives:
Here the issue:
Can I solve somehow?