Error: Linking `libcufile-1.5.0.59-0` in docker

Hello,

We are using micromamba in our docker containers, and it started to fail in the "linking" process. The error is

Linking libcufile-1.5.0.59-0
warning  libmamba Invalid package cache, could not read 'paths.json' from '/opt/conda/pkgs/libcufile-1.5.0.59-0'

error    libmamba Cannot find a valid extracted directory cache for 'libcufile-1.5.0.59-0.tar.bz2'
critical libmamba Package cache error.

How to reproduce

Below is a dockerfile to reproduce the error. The same dockerfile used to work in the past (Nov 14)

FROM nvidia/cuda:11.6.1-base-ubuntu20.04

ENV DEBIAN_FRONTEND=noninteractive

RUN apt-get update \
    && apt-get -y upgrade --only-upgrade systemd openssl cryptsetup \
    && apt-get install -y \
    bzip2 \
    curl \
    git \
    git-lfs \
    tar \
    gcc \
    g++ \
    # audio
    libsndfile1-dev \
    ffmpeg \
    && apt-get clean autoremove --yes \
    && rm -rf /var/lib/{apt,dpkg,cache,log}

# install micromamba
ENV MAMBA_ROOT_PREFIX=/opt/conda
ENV PATH=/opt/conda/bin:$PATH
ENV LD_LIBRARY_PATH="/opt/conda/lib:${LD_LIBRARY_PATH}"

RUN curl -L https://micromamba.snakepit.net/api/micromamba/linux-64/latest | tar -xj "bin/micromamba" \
    && touch /root/.bashrc \
    && ./bin/micromamba shell init -s bash -p /opt/conda  \
    && grep -v '[ -z "\$PS1" ] && return' /root/.bashrc  > /opt/conda/bashrc

RUN micromamba install -y -n base -c conda-forge python=3.9.13 nvidia::cudatoolkit=11.6 pytorch::pytorch=1.13.0=py3.9_cuda11.6*

Full docker build stack

```bash Unpacking libjbig0:amd64 (2.1-3.1ubuntu0.20.04.1) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../099-libwebp6_0.6.1-2ubuntu0.20.04.1_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2ubuntu0.20.04.1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../100-libtiff5_4.1.0+git191117-2ubuntu0.20.04.7_amd64.deb ... Unpacking libtiff5:amd64 (4.1.0+git191117-2ubuntu0.20.04.7) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../101-libgdk-pixbuf2.0-common_2.40.0+dfsg-3ubuntu0.4_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.40.0+dfsg-3ubuntu0.4) ... Selecting previously unselected package libgdk-pixbuf2.0-0:amd64. Preparing to unpack .../102-libgdk-pixbuf2.0-0_2.40.0+dfsg-3ubuntu0.4_amd64.deb ... Unpacking libgdk-pixbuf2.0-0:amd64 (2.40.0+dfsg-3ubuntu0.4) ... Selecting previously unselected package fontconfig. Preparing to unpack .../103-fontconfig_2.13.1-2ubuntu3_amd64.deb ... 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Setting up libogg0:amd64 (1.3.4-0ubuntu1) ... Setting up perl-modules-5.30 (5.30.0-9ubuntu0.3) ... Setting up libspeex1:amd64 (1.2~rc1.2-1.1ubuntu1.20.04.1) ... Setting up libshine3:amd64 (3.1.1-2) ... Setting up libtwolame0:amd64 (0.4.0-2) ... Setting up libdatrie1:amd64 (0.2.12-3) ... Setting up xdg-user-dirs (0.17-2ubuntu1) ... Setting up alsa-ucm-conf (1.2.2-1ubuntu0.13) ... Setting up libgsm1:amd64 (1.0.18-2) ... Setting up libx264-155:amd64 (2:0.155.2917+git0a84d98-2) ... Setting up libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.4) ... No schema files found: doing nothing. Setting up manpages (5.05-1) ... Setting up libglvnd0:amd64 (1.3.2-1~ubuntu0.20.04.2) ... Setting up libaom0:amd64 (1.0.0.errata1-3build1) ... Setting up libbrotli1:amd64 (1.0.7-6ubuntu0.1) ... Setting up libgdk-pixbuf2.0-common (2.40.0+dfsg-3ubuntu0.4) ... Setting up libnorm1:amd64 (1.5.8+dfsg2-2build1) ... Setting up libmysofa1:amd64 (1.0~dfsg0-1) ... Setting up binutils-common:amd64 (2.34-6ubuntu1.4) ... Setting up x11-common (1:7.7+19ubuntu14) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-2ubuntu1.1) ... Setting up libnghttp2-14:amd64 (1.40.0-1build1) ... Setting up less (551-1ubuntu0.1) ... Setting up linux-libc-dev:amd64 (5.4.0-135.152) ... Setting up libctf-nobfd0:amd64 (2.34-6ubuntu1.4) ... Setting up libcdio18:amd64 (2.0.0-2) ... Setting up xkb-data (2.29-2) ... Setting up krb5-locales (1.17-6ubuntu4.1) ... Setting up libogg-dev:amd64 (1.3.4-0ubuntu1) ... Setting up libgomp1:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up libcbor0.6:amd64 (0.6.0-0ubuntu1) ... Setting up libxvidcore4:amd64 (2:1.3.7-1) ... Setting up libjbig0:amd64 (2.1-3.1ubuntu0.20.04.1) ... Setting up libsnappy1v5:amd64 (1.1.8-1build1) ... Setting up libflac8:amd64 (1.3.3-1ubuntu0.1) ... Setting up libkrb5support0:amd64 (1.17-6ubuntu4.1) ... Setting up tzdata (2022g-0ubuntu0.20.04.1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Dec 15 16:28:52 UTC 2022. Universal Time is now: Thu Dec 15 16:28:52 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasound2-data (1.2.2-2.1ubuntu2.5) ... Setting up libglib2.0-data (2.64.6-1~ubuntu20.04.4) ... Setting up libslang2:amd64 (2.3.2-4) ... Setting up libva2:amd64 (2.7.0-2) ... Setting up libwrap0:amd64 (7.6.q-30) ... Setting up libigdgmm11:amd64 (20.1.1+ds1-1) ... Setting up libx11-data (2:1.6.9-2ubuntu1.2) ... Setting up libmpfr6:amd64 (4.0.2-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libcodec2-0.9:amd64 (0.9.2-2) ... Setting up libdbus-1-3:amd64 (1.12.16-2ubuntu2.3) ... Setting up dbus (1.12.16-2ubuntu2.3) ... Setting up xz-utils (5.2.4-1ubuntu1.1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/lzma.1.gz because associated file /usr/share/man/man1/xz.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/unlzma.1.gz because associated file /usr/share/man/man1/unxz.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzcat.1.gz because associated file /usr/share/man/man1/xzcat.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzmore.1.gz because associated file /usr/share/man/man1/xzmore.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzless.1.gz because associated file /usr/share/man/man1/xzless.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzdiff.1.gz because associated file /usr/share/man/man1/xzdiff.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzcmp.1.gz because associated file /usr/share/man/man1/xzcmp.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzgrep.1.gz because associated file /usr/share/man/man1/xzgrep.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzegrep.1.gz because associated file /usr/share/man/man1/xzegrep.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzfgrep.1.gz because associated file /usr/share/man/man1/xzfgrep.1.gz (of link group lzma) doesn't exist Setting up libfribidi0:amd64 (1.0.8-2ubuntu0.1) ... Setting up libopus0:amd64 (1.3.1-0ubuntu1) ... Setting up libquadmath0:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up intel-media-va-driver:amd64 (20.1.1+dfsg1-1) ... Setting up libpng16-16:amd64 (1.6.37-2) ... Setting up libmpc3:amd64 (1.1.0-1) ... Setting up libatomic1:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up libvorbis0a:amd64 (1.3.6-2ubuntu1) ... Setting up patch (2.7.6-6) ... Setting up libwebp6:amd64 (0.6.1-2ubuntu0.20.04.1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libsensors5:amd64 (1:3.6.0-2ubuntu1.1) ... Setting up libaacs0:amd64 (0.9.0-2) ... Setting up libk5crypto3:amd64 (1.17-6ubuntu4.1) ... Setting up libjpeg-turbo8:amd64 (2.0.3-0ubuntu1.20.04.3) ... Setting up libfftw3-double3:amd64 (3.3.8-2ubuntu1) ... Setting up libglapi-mesa:amd64 (21.2.6-0ubuntu0.1~20.04.2) ... Setting up libvulkan1:amd64 (1.2.131.2-1) ... Setting up libubsan1:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up libbdplus0:amd64 (0.1.2-3) ... Setting up libnuma1:amd64 (2.0.12-1) ... Setting up libvidstab1.1:amd64 (1.1.0-2) ... Setting up alsa-topology-conf (1.2.2-1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... Setting up libasyncns0:amd64 (0.8-6) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libvpx6:amd64 (1.8.2-1build1) ... Setting up libcrypt-dev:amd64 (1:4.4.10-10ubuntu4) ... Setting up libwavpack1:amd64 (5.2.0-1ubuntu0.1) ... Setting up libbs2b0:amd64 (3.1.0+dfsg-2.2build1) ... Setting up libasound2:amd64 (1.2.2-2.1ubuntu2.5) ... Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... Setting up git-man (1:2.25.1-1ubuntu3.6) ... Setting up libopenal-data (1:1.19.1-1) ... Setting up libthai-data (0.1.28-3) ... Setting up libisl22:amd64 (0.22.1-1) ... Setting up netbase (6.1) ... Setting up libkrb5-3:amd64 (1.17-6ubuntu4.1) ... Setting up libwayland-egl1:amd64 (1.18.0-1ubuntu0.1) ... Setting up libusb-1.0-0:amd64 (2:1.0.23-2build1) ... Setting up libbinutils:amd64 (2.34-6ubuntu1.4) ... Setting up libfido2-1:amd64 (1.3.1-1ubuntu2) ... Setting up libc-dev-bin (2.31-0ubuntu9.9) ... Setting up libsamplerate0:amd64 (0.1.9-2) ... Setting up libwebpmux3:amd64 (0.6.1-2ubuntu0.20.04.1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libdrm-common (2.4.107-8ubuntu1~20.04.2) ... Setting up libelf1:amd64 (0.176-1.1build1) ... Setting up publicsuffix (20200303.0012-1) ... Setting up libcc1-0:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libzvbi-common (0.2.35-17) ... Setting up liblsan0:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up libmp3lame0:amd64 (3.100-3) ... Setting up libitm1:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up libvorbisenc2:amd64 (1.3.6-2ubuntu1) ... Setting up libpgm-5.2-0:amd64 (5.2.122~dfsg-3ubuntu1) ... Setting up libgdbm6:amd64 (1.18.1-5) ... Setting up gcc-9-base:amd64 (9.4.0-1ubuntu1~20.04.1) ... Setting up libiec61883-0:amd64 (1.2.0-3) ... Setting up libserd-0-0:amd64 (0.30.2-1) ... Setting up libtsan0:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up libxkbcommon0:amd64 (0.10.0-1) ... Setting up libwayland-client0:amd64 (1.18.0-1ubuntu0.1) ... Setting up libctf0:amd64 (2.34-6ubuntu1.4) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libavc1394-0:amd64 (0.5.4-5) ... Setting up libzvbi0:amd64 (0.2.35-17) ... Setting up manpages-dev (5.05-1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu1) ... Setting up libflac-dev:amd64 (1.3.3-1ubuntu0.1) ... Setting up libxcb1:amd64 (1.14-2) ... Setting up libxcb-xfixes0:amd64 (1.14-2) ... Setting up libcaca0:amd64 (0.99.beta19-2.1ubuntu1.20.04.2) ... Setting up libx265-179:amd64 (3.2.1-1build1) ... Setting up libxcb-render0:amd64 (1.14-2) ... Setting up libsoxr0:amd64 (0.1.3-2build1) ... Setting up libcdio-cdda2:amd64 (10.2+2.0.0-1) ... Setting up fontconfig-config (2.13.1-2ubuntu3) ... Setting up libicu66:amd64 (66.1-2ubuntu2.1) ... Setting up libcdio-paranoia2:amd64 (10.2+2.0.0-1) ... Setting up libxcb-glx0:amd64 (1.14-2) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libxcb-shape0:amd64 (1.14-2) ... Setting up libdc1394-22:amd64 (2.2.5-2.1) ... Setting up libxcb-shm0:amd64 (1.14-2) ... Setting up libxcb-present0:amd64 (1.14-2) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up libvorbisfile3:amd64 (1.3.6-2ubuntu1) ... Setting up libasan5:amd64 (9.4.0-1ubuntu1~20.04.1) ... Setting up libfreetype6:amd64 (2.10.1-2ubuntu0.2) ... Setting up libxcb-sync1:amd64 (1.14-2) ... Setting up libllvm12:amd64 (1:12.0.0-3ubuntu1~20.04.5) ... Setting up libgssapi-krb5-2:amd64 (1.17-6ubuntu4.1) ... Setting up libgdbm-compat4:amd64 (1.18.1-5) ... Setting up libssh-4:amd64 (0.9.3-2ubuntu2.2) ... Setting up librubberband2:amd64 (1.8.2-1build1) ... Setting up libsndio7.0:amd64 (1.5.0-3) ... Setting up libxcb-dri2-0:amd64 (1.14-2) ... Setting up libjack-jackd2-0:amd64 (1.9.12~dfsg-2ubuntu2) ... Setting up libdrm2:amd64 (2.4.107-8ubuntu1~20.04.2) ... Setting up libflite1:amd64 (2.1-release-3) ... Setting up libva-drm2:amd64 (2.7.0-2) ... Setting up libsord-0-0:amd64 (0.16.4-1) ... Setting up libwayland-cursor0:amd64 (1.18.0-1ubuntu0.1) ... Setting up libxcb-randr0:amd64 (1.14-2) ... Setting up libsratom-0-0:amd64 (0.6.4-1) ... Setting up cpp-9 (9.4.0-1ubuntu1~20.04.1) ... Setting up libperl5.30:amd64 (5.30.0-9ubuntu0.3) ... Setting up libcurl4:amd64 (7.68.0-1ubuntu2.14) ... Setting up libc6-dev:amd64 (2.31-0ubuntu9.9) ... Setting up libx11-6:amd64 (2:1.6.9-2ubuntu1.2) ... Setting up libharfbuzz0b:amd64 (2.6.4-1ubuntu4.2) ... Setting up libtiff5:amd64 (4.1.0+git191117-2ubuntu0.20.04.7) ... Setting up curl (7.68.0-1ubuntu2.14) ... Setting up libfontconfig1:amd64 (2.13.1-2ubuntu3) ... Setting up libsndfile1:amd64 (1.0.28-7ubuntu0.1) ... Setting up liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.5) ... Setting up libopenmpt0:amd64 (0.4.11-1build1) ... Setting up libxmuu1:amd64 (2:1.1.3-0ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.34-6ubuntu1.4) ... Setting up libdrm-amdgpu1:amd64 (2.4.107-8ubuntu1~20.04.2) ... Setting up libssh-gcrypt-4:amd64 (0.9.3-2ubuntu2.2) ... Setting up libvorbis-dev:amd64 (1.3.6-2ubuntu1) ... Setting up libxcb-dri3-0:amd64 (1.14-2) ... Setting up mesa-vulkan-drivers:amd64 (21.2.6-0ubuntu0.1~20.04.2) ... Setting up fontconfig (2.13.1-2ubuntu3) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.107-8ubuntu1~20.04.2) ... Setting up libzmq5:amd64 (4.3.2-2ubuntu1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libpulse0:amd64 (1:13.99.1-1ubuntu3.13) ... Setting up libdrm-radeon1:amd64 (2.4.107-8ubuntu1~20.04.2) ... Setting up openssh-client (1:8.2p1-4ubuntu0.5) ... Setting up libpango-1.0-0:amd64 (1.44.7-2ubuntu4) ... Setting up libdrm-intel1:amd64 (2.4.107-8ubuntu1~20.04.2) ... Setting up libgl1-mesa-dri:amd64 (21.2.6-0ubuntu0.1~20.04.2) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.68.0-1ubuntu2.14) ... Setting up libopenal1:amd64 (1:1.19.1-1) ... Setting up binutils (2.34-6ubuntu1.4) ... Setting up libcairo2:amd64 (1.16.0-4ubuntu1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1build1) ... Setting up libgcc-9-dev:amd64 (9.4.0-1ubuntu1~20.04.1) ... Setting up perl (5.30.0-9ubuntu0.3) ... Setting up libass9:amd64 (1:0.14.0-2) ... Setting up libxfixes3:amd64 (1:5.0.3-2) ... Setting up shared-mime-info (1.15-1) ... Setting up libxinerama1:amd64 (2:1.1.4-2) ... Setting up libxv1:amd64 (2:1.0.11-1) ... Setting up libxrandr2:amd64 (2:1.5.2-0ubuntu1) ... Setting up libdpkg-perl (1.19.7ubuntu3.2) ... Setting up xauth (1:1.1-0ubuntu1) ... Setting up libvdpau1:amd64 (1.3-1ubuntu2) ... Setting up cpp (4:9.3.0-1ubuntu2) ... Setting up libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... Setting up libcairo-gobject2:amd64 (1.16.0-4ubuntu1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up mesa-va-drivers:amd64 (21.2.6-0ubuntu0.1~20.04.2) ... Setting up libpangoft2-1.0-0:amd64 (1.44.7-2ubuntu4) ... Setting up libbluray2:amd64 (1:1.2.0-1) ... Setting up libva-x11-2:amd64 (2.7.0-2) ... Setting up i965-va-driver:amd64 (2.4.0-0ubuntu1) ... Setting up libpangocairo-1.0-0:amd64 (1.44.7-2ubuntu4) ... Setting up gcc-9 (9.4.0-1ubuntu1~20.04.1) ... Setting up mesa-vdpau-drivers:amd64 (21.2.6-0ubuntu0.1~20.04.2) ... Setting up libglx-mesa0:amd64 (21.2.6-0ubuntu0.1~20.04.2) ... Setting up libstdc++-9-dev:amd64 (9.4.0-1ubuntu1~20.04.1) ... Setting up libxi6:amd64 (2:1.7.10-0ubuntu1) ... Setting up libglx0:amd64 (1.3.2-1~ubuntu0.20.04.2) ... Setting up libfile-fcntllock-perl (0.22-3build4) ... Setting up libxcursor1:amd64 (1:1.2.0-2) ... Setting up libavutil56:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up gcc (4:9.3.0-1ubuntu2) ... Setting up liberror-perl (0.17029-1) ... Setting up libgl1:amd64 (1.3.2-1~ubuntu0.20.04.2) ... Setting up va-driver-all:amd64 (2.7.0-2) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.40.0+dfsg-3ubuntu0.4) ... Setting up libpostproc55:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up pkg-config (0.29.1-0ubuntu4) ... Setting up git (1:2.25.1-1ubuntu3.6) ... Setting up g++-9 (9.4.0-1ubuntu1~20.04.1) ... Setting up vdpau-driver-all:amd64 (1.3-1ubuntu2) ... Setting up g++ (4:9.3.0-1ubuntu2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/c++.1.gz because associated file /usr/share/man/man1/g++.1.gz (of link group c++) doesn't exist Setting up libgdk-pixbuf2.0-bin (2.40.0+dfsg-3ubuntu0.4) ... Setting up libswscale5:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up libsdl2-2.0-0:amd64 (2.0.10+dfsg1-3) ... Setting up git-lfs (2.9.2-1) ... Setting up libswresample3:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up libavresample4:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up librsvg2-2:amd64 (2.48.9-1ubuntu0.20.04.1) ... Setting up libsndfile1-dev (1.0.28-7ubuntu0.1) ... Setting up librsvg2-common:amd64 (2.48.9-1ubuntu0.20.04.1) ... Setting up libavcodec58:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up libchromaprint1:amd64 (1.4.3-3build1) ... Setting up libavformat58:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up libavfilter7:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up libavdevice58:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up ffmpeg (7:4.2.7-0ubuntu0.1) ... Processing triggers for libc-bin (2.31-0ubuntu9.9) ... Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.40.0+dfsg-3ubuntu0.4) ... Removing intermediate container f8ac9602ff71 ---> 33cceae16590 Step 4/8 : ENV MAMBA_ROOT_PREFIX=/opt/conda ---> Running in 048e5e69d55f Removing intermediate container 048e5e69d55f ---> 83415dd0cefc Step 5/8 : ENV PATH=/opt/conda/bin:$PATH ---> Running in 242ee32f262b Removing intermediate container 242ee32f262b ---> 64d5fdaa745f Step 6/8 : ENV LD_LIBRARY_PATH="/opt/conda/lib:${LD_LIBRARY_PATH}" ---> Running in 09d9892cf92f Removing intermediate container 09d9892cf92f ---> 8f94c9adf20f Step 7/8 : RUN curl -L https://micromamba.snakepit.net/api/micromamba/linux-64/latest | tar -xj "bin/micromamba" && touch /root/.bashrc && ./bin/micromamba shell init -s bash -p /opt/conda && grep -v '[ -z "\$PS1" ] && return' /root/.bashrc > /opt/conda/bashrc ---> Running in bef9ad7c6c1f % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 3991 0 3991 0 0 8280 0 --:--:-- --:--:-- --:--:-- 8280 100 5547k 100 5547k 0 0 4513k 0 0:00:01 0:00:01 --:--:-- 4513k Modifying RC file "/root/.bashrc" Generating config for root prefix "/opt/conda" Setting mamba executable to: "/usr/bin/micromamba"Adding (or replacing) the following in your "/root/.bashrc" file # >>> mamba initialize >>> # !! Contents within this block are managed by 'mamba init' !! export MAMBA_EXE="/usr/bin/micromamba"; export MAMBA_ROOT_PREFIX="/opt/conda"; __mamba_setup="$("$MAMBA_EXE" shell hook --shell bash --prefix "$MAMBA_ROOT_PREFIX" 2> /dev/null)" if [ $? -eq 0 ]; then eval "$__mamba_setup" else if [ -f "/opt/conda/etc/profile.d/micromamba.sh" ]; then . "/opt/conda/etc/profile.d/micromamba.sh" else export PATH="/opt/conda/bin:$PATH" # extra space after export prevents interference from conda init fi fi unset __mamba_setup # <<< mamba initialize <<< Removing intermediate container bef9ad7c6c1f ---> 30e166f2ef0b Step 8/8 : RUN micromamba install -y -n base -c conda-forge -c nvidia -c pytorch python=3.9.13 nvidia::cudatoolkit=11.6 pytorch::pytorch=1.13.0=py3.9_cuda11.6* ---> Running in bf9cae2a9d62 __ __ ______ ___ ____ _____ ___ / /_ ____ _ / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/ / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ / / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/ /_/ Transaction Prefix: /opt/conda Updating specs: - python=3.9.13 - nvidia::cudatoolkit=11.6 - pytorch::pytorch==1.13.0[build=py3.9_cuda11.6*] Package Version Build Channel Size ─────────────────────────────────────────────────────────────────────────────────────────────────────── Install: ─────────────────────────────────────────────────────────────────────────────────────────────────────── + _libgcc_mutex 0.1 conda_forge conda-forge/linux-64 3kB + _openmp_mutex 4.5 2_kmp_llvm conda-forge/linux-64 6kB + blas 2.116 mkl conda-forge/linux-64 13kB + blas-devel 3.9.0 16_linux64_mkl conda-forge/linux-64 13kB + bzip2 1.0.8 h7f98852_4 conda-forge/linux-64 496kB + ca-certificates 2022.12.7 ha878542_0 conda-forge/linux-64 146kB + cuda 11.6.1 0 nvidia/linux-64 1kB + cuda-cccl 11.6.55 hf6102b2_0 nvidia/linux-64 1MB + cuda-command-line-tools 11.6.2 0 nvidia/linux-64 1kB + cuda-compiler 11.6.2 0 nvidia/linux-64 1kB + cuda-cudart 11.6.55 he381448_0 nvidia/linux-64 198kB + cuda-cudart-dev 11.6.55 h42ad0f4_0 nvidia/linux-64 1MB + cuda-cuobjdump 11.6.124 h2eeebcb_0 nvidia/linux-64 138kB + cuda-cupti 11.6.124 h86345e5_0 nvidia/linux-64 23MB + cuda-cuxxfilt 11.6.124 hecbf4f6_0 nvidia/linux-64 290kB + cuda-driver-dev 11.6.55 0 nvidia/linux-64 17kB + cuda-gdb 12.0.90 0 nvidia/linux-64 6MB + cuda-libraries 11.6.1 0 nvidia/linux-64 2kB + cuda-libraries-dev 11.6.1 0 nvidia/linux-64 2kB + cuda-memcheck 11.8.86 0 nvidia/linux-64 172kB + cuda-nsight 12.0.78 0 nvidia/linux-64 119MB + cuda-nsight-compute 12.0.0 0 nvidia/linux-64 1kB + cuda-nvcc 11.6.124 hbba6d2d_0 nvidia/linux-64 44MB + cuda-nvdisasm 12.0.76 0 nvidia/linux-64 50MB + cuda-nvml-dev 11.6.55 haa9ef22_0 nvidia/linux-64 67kB + cuda-nvprof 12.0.90 0 nvidia/linux-64 5MB + cuda-nvprune 11.6.124 he22ec0a_0 nvidia/linux-64 66kB + cuda-nvrtc 11.6.124 h020bade_0 nvidia/linux-64 18MB + cuda-nvrtc-dev 11.6.124 h249d397_0 nvidia/linux-64 18MB + cuda-nvtx 11.6.124 h0630a44_0 nvidia/linux-64 59kB + cuda-nvvp 12.0.90 0 nvidia/linux-64 120MB + cuda-runtime 11.6.1 0 nvidia/linux-64 1kB + cuda-samples 11.6.101 h8efea70_0 nvidia/linux-64 5kB + cuda-sanitizer-api 12.0.90 0 nvidia/linux-64 17MB + cuda-toolkit 11.6.1 0 nvidia/linux-64 1kB + cuda-tools 11.6.1 0 nvidia/linux-64 1kB + cuda-visual-tools 11.6.1 0 nvidia/linux-64 1kB + cudatoolkit 11.6.0 habf752d_9 nvidia/linux-64 861MB + gds-tools 1.5.0.59 0 nvidia/linux-64 43MB + icu 70.1 h27087fc_0 conda-forge/linux-64 14MB + ld_impl_linux-64 2.39 hcc3a1bd_1 conda-forge/linux-64 691kB + libblas 3.9.0 16_linux64_mkl conda-forge/linux-64 13kB + libcblas 3.9.0 16_linux64_mkl conda-forge/linux-64 13kB + libcublas 11.9.2.110 h5e84587_0 nvidia/linux-64 315MB + libcublas-dev 11.9.2.110 h5c901ab_0 nvidia/linux-64 326MB + libcufft 10.7.1.112 hf425ae0_0 nvidia/linux-64 98MB + libcufft-dev 10.7.1.112 ha5ce4c0_0 nvidia/linux-64 207MB + libcufile 1.5.0.59 0 nvidia/linux-64 772kB + libcufile-dev 1.5.0.59 0 nvidia/linux-64 13kB + libcurand 10.3.1.50 0 nvidia/linux-64 54MB + libcurand-dev 10.3.1.50 0 nvidia/linux-64 460kB + libcusolver 11.3.4.124 h33c3c4e_0 nvidia/linux-64 91MB + libcusparse 11.7.2.124 h7538f96_0 nvidia/linux-64 169MB + libcusparse-dev 11.7.2.124 hbbe9722_0 nvidia/linux-64 345MB + libffi 3.4.2 h7f98852_5 conda-forge/linux-64 58kB + libgcc-ng 12.2.0 h65d4601_19 conda-forge/linux-64 954kB + libgfortran-ng 12.2.0 h69a702a_19 conda-forge/linux-64 23kB + libgfortran5 12.2.0 h337968e_19 conda-forge/linux-64 2MB + libhwloc 2.8.0 h32351e8_1 conda-forge/linux-64 3MB + libiconv 1.17 h166bdaf_0 conda-forge/linux-64 1MB + liblapack 3.9.0 16_linux64_mkl conda-forge/linux-64 13kB + liblapacke 3.9.0 16_linux64_mkl conda-forge/linux-64 13kB + libnpp 11.6.3.124 hd2722f0_0 nvidia/linux-64 124MB + libnpp-dev 11.6.3.124 h3c42840_0 nvidia/linux-64 121MB + libnsl 2.0.0 h7f98852_0 conda-forge/linux-64 31kB + libnvjpeg 11.6.2.124 hd473ad6_0 nvidia/linux-64 2MB + libnvjpeg-dev 11.6.2.124 hb5906b9_0 nvidia/linux-64 2MB + libsqlite 3.40.0 h753d276_0 conda-forge/linux-64 810kB + libstdcxx-ng 12.2.0 h46fd767_19 conda-forge/linux-64 4MB + libuuid 2.32.1 h7f98852_1000 conda-forge/linux-64 28kB + libxml2 2.10.3 h7463322_0 conda-forge/linux-64 773kB + libzlib 1.2.13 h166bdaf_4 conda-forge/linux-64 66kB + llvm-openmp 15.0.6 he0ac6c6_0 conda-forge/linux-64 3MB + mkl 2022.1.0 h84fe81f_915 conda-forge/linux-64 209MB + mkl-devel 2022.1.0 ha770c72_916 conda-forge/linux-64 26kB + mkl-include 2022.1.0 h84fe81f_915 conda-forge/linux-64 763kB + ncurses 6.3 h27087fc_1 conda-forge/linux-64 1MB + nsight-compute 2022.4.0.15 0 nvidia/linux-64 801MB + openssl 3.0.7 h0b41bf4_1 conda-forge/linux-64 3MB + pip 22.3.1 pyhd8ed1ab_0 conda-forge/noarch 2MB + python 3.9.13 h2660328_0_cpython conda-forge/linux-64 28MB + pytorch 1.13.0 py3.9_cuda11.6_cudnn8.3.2_0 pytorch/linux-64 1GB + pytorch-cuda 11.6 h867d48c_1 pytorch/noarch 3kB + pytorch-mutex 1.0 cuda pytorch/noarch 3kB + readline 8.1.2 h0f457ee_0 conda-forge/linux-64 298kB + setuptools 65.5.1 pyhd8ed1ab_0 conda-forge/noarch 748kB + sqlite 3.40.0 h4ff8645_0 conda-forge/linux-64 820kB + tbb 2021.7.0 h924138e_1 conda-forge/linux-64 2MB + tk 8.6.12 h27826a3_0 conda-forge/linux-64 3MB + typing_extensions 4.4.0 pyha770c72_0 conda-forge/noarch 30kB + tzdata 2022g h191b570_0 conda-forge/noarch 108kB + wheel 0.38.4 pyhd8ed1ab_0 conda-forge/noarch 33kB + xz 5.2.6 h166bdaf_0 conda-forge/linux-64 418kB Summary: Install: 93 packages Total download: 6GB ─────────────────────────────────────────────────────────────────────────────────────────────────────── Transaction starting Linking pytorch-mutex-1.0-cuda Linking mkl-include-2022.1.0-h84fe81f_915 Linking _libgcc_mutex-0.1-conda_forge Linking libgfortran5-12.2.0-h337968e_19 Linking libstdcxx-ng-12.2.0-h46fd767_19 Linking ld_impl_linux-64-2.39-hcc3a1bd_1 Linking ca-certificates-2022.12.7-ha878542_0 Linking libgcc-ng-12.2.0-h65d4601_19 Linking libzlib-1.2.13-h166bdaf_4 Linking llvm-openmp-15.0.6-he0ac6c6_0 Linking _openmp_mutex-4.5-2_kmp_llvm Linking libgfortran-ng-12.2.0-h69a702a_19 Linking libuuid-2.32.1-h7f98852_1000 Linking libiconv-1.17-h166bdaf_0 Linking icu-70.1-h27087fc_0 Linking xz-5.2.6-h166bdaf_0 Linking libsqlite-3.40.0-h753d276_0 Linking openssl-3.0.7-h0b41bf4_1 Linking ncurses-6.3-h27087fc_1 Linking libffi-3.4.2-h7f98852_5 Linking bzip2-1.0.8-h7f98852_4 Linking tk-8.6.12-h27826a3_0 Linking libnsl-2.0.0-h7f98852_0 Linking libxml2-2.10.3-h7463322_0 Linking readline-8.1.2-h0f457ee_0 Linking libhwloc-2.8.0-h32351e8_1 Linking sqlite-3.40.0-h4ff8645_0 Linking tbb-2021.7.0-h924138e_1 Linking mkl-2022.1.0-h84fe81f_915 Linking mkl-devel-2022.1.0-ha770c72_916 Linking libblas-3.9.0-16_linux64_mkl Linking liblapack-3.9.0-16_linux64_mkl Linking libcblas-3.9.0-16_linux64_mkl Linking liblapacke-3.9.0-16_linux64_mkl Linking blas-devel-3.9.0-16_linux64_mkl Linking blas-2.116-mkl Linking tzdata-2022g-h191b570_0 Linking cuda-cudart-11.6.55-he381448_0 Linking libcufft-10.7.1.112-hf425ae0_0 Linking cuda-nvml-dev-11.6.55-haa9ef22_0 Linking cuda-samples-11.6.101-h8efea70_0 Linking cuda-driver-dev-11.6.55-0 Linking cuda-nsight-12.0.78-0 Linking nsight-compute-2022.4.0.15-0 warning libmamba [nsight-compute-2022.4.0.15-0] The following files were already present in the environment: - LICENSE Linking cuda-cupti-11.6.124-h86345e5_0 warning libmamba [cuda-cupti-11.6.124-h86345e5_0] The following files were already present in the environment: - LICENSE Linking cuda-nvtx-11.6.124-h0630a44_0 warning libmamba [cuda-nvtx-11.6.124-h0630a44_0] The following files were already present in the environment: - LICENSE Linking libcufile-1.5.0.59-0 warning libmamba Invalid package cache, could not read 'paths.json' from '/opt/conda/pkgs/libcufile-1.5.0.59-0' error libmamba Cannot find a valid extracted directory cache for 'libcufile-1.5.0.59-0.tar.bz2' critical libmamba Package cache error. The command '/bin/sh -c micromamba install -y -n base -c conda-forge -c nvidia -c pytorch python=3.9.13 nvidia::cudatoolkit=11.6 pytorch::pytorch=1.13.0=py3.9_cuda11.6*' returned a non-zero code: 1 ```

mamba-org / mamba

Error: Linking `libcufile-1.5.0.59-0` in docker #2170

How to reproduce