Closed philschmid closed 1 year ago
Hello,
We are using micromamba in our docker containers, and it started to fail in the "linking" process. The error is
micromamba
Linking libcufile-1.5.0.59-0 warning libmamba Invalid package cache, could not read 'paths.json' from '/opt/conda/pkgs/libcufile-1.5.0.59-0' error libmamba Cannot find a valid extracted directory cache for 'libcufile-1.5.0.59-0.tar.bz2' critical libmamba Package cache error.
Below is a dockerfile to reproduce the error. The same dockerfile used to work in the past (Nov 14)
FROM nvidia/cuda:11.6.1-base-ubuntu20.04 ENV DEBIAN_FRONTEND=noninteractive RUN apt-get update \ && apt-get -y upgrade --only-upgrade systemd openssl cryptsetup \ && apt-get install -y \ bzip2 \ curl \ git \ git-lfs \ tar \ gcc \ g++ \ # audio libsndfile1-dev \ ffmpeg \ && apt-get clean autoremove --yes \ && rm -rf /var/lib/{apt,dpkg,cache,log} # install micromamba ENV MAMBA_ROOT_PREFIX=/opt/conda ENV PATH=/opt/conda/bin:$PATH ENV LD_LIBRARY_PATH="/opt/conda/lib:${LD_LIBRARY_PATH}" RUN curl -L https://micromamba.snakepit.net/api/micromamba/linux-64/latest | tar -xj "bin/micromamba" \ && touch /root/.bashrc \ && ./bin/micromamba shell init -s bash -p /opt/conda \ && grep -v '[ -z "\$PS1" ] && return' /root/.bashrc > /opt/conda/bashrc RUN micromamba install -y -n base -c conda-forge python=3.9.13 nvidia::cudatoolkit=11.6 pytorch::pytorch=1.13.0=py3.9_cuda11.6*
Same as https://github.com/mamba-org/mamba/issues/2167?
Same as #2167?
My bad! yes seems to be the same
Ok I’ll close this, thanks for the reproducer!
Hello,
We are using
micromamba
in our docker containers, and it started to fail in the "linking" process. The error isHow to reproduce
Below is a dockerfile to reproduce the error. The same dockerfile used to work in the past (Nov 14)
Full docker build stack
```bash Unpacking libjbig0:amd64 (2.1-3.1ubuntu0.20.04.1) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../099-libwebp6_0.6.1-2ubuntu0.20.04.1_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2ubuntu0.20.04.1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../100-libtiff5_4.1.0+git191117-2ubuntu0.20.04.7_amd64.deb ... Unpacking libtiff5:amd64 (4.1.0+git191117-2ubuntu0.20.04.7) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../101-libgdk-pixbuf2.0-common_2.40.0+dfsg-3ubuntu0.4_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.40.0+dfsg-3ubuntu0.4) ... Selecting previously unselected package libgdk-pixbuf2.0-0:amd64. Preparing to unpack .../102-libgdk-pixbuf2.0-0_2.40.0+dfsg-3ubuntu0.4_amd64.deb ... Unpacking libgdk-pixbuf2.0-0:amd64 (2.40.0+dfsg-3ubuntu0.4) ... Selecting previously unselected package fontconfig. Preparing to unpack .../103-fontconfig_2.13.1-2ubuntu3_amd64.deb ... Unpacking fontconfig (2.13.1-2ubuntu3) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../104-libgraphite2-3_1.3.13-11build1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.13-11build1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../105-libharfbuzz0b_2.6.4-1ubuntu4.2_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.6.4-1ubuntu4.2) ... Selecting previously unselected package libthai-data. Preparing to unpack .../106-libthai-data_0.1.28-3_all.deb ... Unpacking libthai-data (0.1.28-3) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../107-libdatrie1_0.2.12-3_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.12-3) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../108-libthai0_0.1.28-3_amd64.deb ... Unpacking libthai0:amd64 (0.1.28-3) ... Selecting previously unselected package libpango-1.0-0:amd64. 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Setting up libogg0:amd64 (1.3.4-0ubuntu1) ... Setting up perl-modules-5.30 (5.30.0-9ubuntu0.3) ... Setting up libspeex1:amd64 (1.2~rc1.2-1.1ubuntu1.20.04.1) ... Setting up libshine3:amd64 (3.1.1-2) ... Setting up libtwolame0:amd64 (0.4.0-2) ... Setting up libdatrie1:amd64 (0.2.12-3) ... Setting up xdg-user-dirs (0.17-2ubuntu1) ... Setting up alsa-ucm-conf (1.2.2-1ubuntu0.13) ... Setting up libgsm1:amd64 (1.0.18-2) ... Setting up libx264-155:amd64 (2:0.155.2917+git0a84d98-2) ... Setting up libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.4) ... No schema files found: doing nothing. Setting up manpages (5.05-1) ... Setting up libglvnd0:amd64 (1.3.2-1~ubuntu0.20.04.2) ... Setting up libaom0:amd64 (1.0.0.errata1-3build1) ... Setting up libbrotli1:amd64 (1.0.7-6ubuntu0.1) ... Setting up libgdk-pixbuf2.0-common (2.40.0+dfsg-3ubuntu0.4) ... Setting up libnorm1:amd64 (1.5.8+dfsg2-2build1) ... Setting up libmysofa1:amd64 (1.0~dfsg0-1) ... Setting up binutils-common:amd64 (2.34-6ubuntu1.4) ... Setting up x11-common (1:7.7+19ubuntu14) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-2ubuntu1.1) ... Setting up libnghttp2-14:amd64 (1.40.0-1build1) ... Setting up less (551-1ubuntu0.1) ... Setting up linux-libc-dev:amd64 (5.4.0-135.152) ... Setting up libctf-nobfd0:amd64 (2.34-6ubuntu1.4) ... Setting up libcdio18:amd64 (2.0.0-2) ... Setting up xkb-data (2.29-2) ... Setting up krb5-locales (1.17-6ubuntu4.1) ... Setting up libogg-dev:amd64 (1.3.4-0ubuntu1) ... Setting up libgomp1:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up libcbor0.6:amd64 (0.6.0-0ubuntu1) ... Setting up libxvidcore4:amd64 (2:1.3.7-1) ... Setting up libjbig0:amd64 (2.1-3.1ubuntu0.20.04.1) ... Setting up libsnappy1v5:amd64 (1.1.8-1build1) ... Setting up libflac8:amd64 (1.3.3-1ubuntu0.1) ... Setting up libkrb5support0:amd64 (1.17-6ubuntu4.1) ... Setting up tzdata (2022g-0ubuntu0.20.04.1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Dec 15 16:28:52 UTC 2022. Universal Time is now: Thu Dec 15 16:28:52 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasound2-data (1.2.2-2.1ubuntu2.5) ... Setting up libglib2.0-data (2.64.6-1~ubuntu20.04.4) ... Setting up libslang2:amd64 (2.3.2-4) ... Setting up libva2:amd64 (2.7.0-2) ... Setting up libwrap0:amd64 (7.6.q-30) ... Setting up libigdgmm11:amd64 (20.1.1+ds1-1) ... Setting up libx11-data (2:1.6.9-2ubuntu1.2) ... Setting up libmpfr6:amd64 (4.0.2-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libcodec2-0.9:amd64 (0.9.2-2) ... Setting up libdbus-1-3:amd64 (1.12.16-2ubuntu2.3) ... Setting up dbus (1.12.16-2ubuntu2.3) ... Setting up xz-utils (5.2.4-1ubuntu1.1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/lzma.1.gz because associated file /usr/share/man/man1/xz.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/unlzma.1.gz because associated file /usr/share/man/man1/unxz.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzcat.1.gz because associated file /usr/share/man/man1/xzcat.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzmore.1.gz because associated file /usr/share/man/man1/xzmore.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzless.1.gz because associated file /usr/share/man/man1/xzless.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzdiff.1.gz because associated file /usr/share/man/man1/xzdiff.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzcmp.1.gz because associated file /usr/share/man/man1/xzcmp.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzgrep.1.gz because associated file /usr/share/man/man1/xzgrep.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzegrep.1.gz because associated file /usr/share/man/man1/xzegrep.1.gz (of link group lzma) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/lzfgrep.1.gz because associated file /usr/share/man/man1/xzfgrep.1.gz (of link group lzma) doesn't exist Setting up libfribidi0:amd64 (1.0.8-2ubuntu0.1) ... Setting up libopus0:amd64 (1.3.1-0ubuntu1) ... Setting up libquadmath0:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up intel-media-va-driver:amd64 (20.1.1+dfsg1-1) ... Setting up libpng16-16:amd64 (1.6.37-2) ... Setting up libmpc3:amd64 (1.1.0-1) ... Setting up libatomic1:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up libvorbis0a:amd64 (1.3.6-2ubuntu1) ... Setting up patch (2.7.6-6) ... Setting up libwebp6:amd64 (0.6.1-2ubuntu0.20.04.1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libsensors5:amd64 (1:3.6.0-2ubuntu1.1) ... Setting up libaacs0:amd64 (0.9.0-2) ... Setting up libk5crypto3:amd64 (1.17-6ubuntu4.1) ... Setting up libjpeg-turbo8:amd64 (2.0.3-0ubuntu1.20.04.3) ... Setting up libfftw3-double3:amd64 (3.3.8-2ubuntu1) ... Setting up libglapi-mesa:amd64 (21.2.6-0ubuntu0.1~20.04.2) ... Setting up libvulkan1:amd64 (1.2.131.2-1) ... Setting up libubsan1:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up libbdplus0:amd64 (0.1.2-3) ... Setting up libnuma1:amd64 (2.0.12-1) ... Setting up libvidstab1.1:amd64 (1.1.0-2) ... Setting up alsa-topology-conf (1.2.2-1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... Setting up libasyncns0:amd64 (0.8-6) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libvpx6:amd64 (1.8.2-1build1) ... Setting up libcrypt-dev:amd64 (1:4.4.10-10ubuntu4) ... Setting up libwavpack1:amd64 (5.2.0-1ubuntu0.1) ... Setting up libbs2b0:amd64 (3.1.0+dfsg-2.2build1) ... Setting up libasound2:amd64 (1.2.2-2.1ubuntu2.5) ... Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... Setting up git-man (1:2.25.1-1ubuntu3.6) ... Setting up libopenal-data (1:1.19.1-1) ... Setting up libthai-data (0.1.28-3) ... Setting up libisl22:amd64 (0.22.1-1) ... Setting up netbase (6.1) ... Setting up libkrb5-3:amd64 (1.17-6ubuntu4.1) ... Setting up libwayland-egl1:amd64 (1.18.0-1ubuntu0.1) ... Setting up libusb-1.0-0:amd64 (2:1.0.23-2build1) ... Setting up libbinutils:amd64 (2.34-6ubuntu1.4) ... Setting up libfido2-1:amd64 (1.3.1-1ubuntu2) ... Setting up libc-dev-bin (2.31-0ubuntu9.9) ... Setting up libsamplerate0:amd64 (0.1.9-2) ... Setting up libwebpmux3:amd64 (0.6.1-2ubuntu0.20.04.1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libdrm-common (2.4.107-8ubuntu1~20.04.2) ... Setting up libelf1:amd64 (0.176-1.1build1) ... Setting up publicsuffix (20200303.0012-1) ... Setting up libcc1-0:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libzvbi-common (0.2.35-17) ... Setting up liblsan0:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up libmp3lame0:amd64 (3.100-3) ... Setting up libitm1:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up libvorbisenc2:amd64 (1.3.6-2ubuntu1) ... Setting up libpgm-5.2-0:amd64 (5.2.122~dfsg-3ubuntu1) ... Setting up libgdbm6:amd64 (1.18.1-5) ... Setting up gcc-9-base:amd64 (9.4.0-1ubuntu1~20.04.1) ... Setting up libiec61883-0:amd64 (1.2.0-3) ... Setting up libserd-0-0:amd64 (0.30.2-1) ... Setting up libtsan0:amd64 (10.3.0-1ubuntu1~20.04) ... Setting up libxkbcommon0:amd64 (0.10.0-1) ... Setting up libwayland-client0:amd64 (1.18.0-1ubuntu0.1) ... Setting up libctf0:amd64 (2.34-6ubuntu1.4) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libavc1394-0:amd64 (0.5.4-5) ... Setting up libzvbi0:amd64 (0.2.35-17) ... Setting up manpages-dev (5.05-1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu1) ... Setting up libflac-dev:amd64 (1.3.3-1ubuntu0.1) ... Setting up libxcb1:amd64 (1.14-2) ... Setting up libxcb-xfixes0:amd64 (1.14-2) ... Setting up libcaca0:amd64 (0.99.beta19-2.1ubuntu1.20.04.2) ... Setting up libx265-179:amd64 (3.2.1-1build1) ... Setting up libxcb-render0:amd64 (1.14-2) ... Setting up libsoxr0:amd64 (0.1.3-2build1) ... Setting up libcdio-cdda2:amd64 (10.2+2.0.0-1) ... Setting up fontconfig-config (2.13.1-2ubuntu3) ... Setting up libicu66:amd64 (66.1-2ubuntu2.1) ... Setting up libcdio-paranoia2:amd64 (10.2+2.0.0-1) ... Setting up libxcb-glx0:amd64 (1.14-2) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libxcb-shape0:amd64 (1.14-2) ... Setting up libdc1394-22:amd64 (2.2.5-2.1) ... Setting up libxcb-shm0:amd64 (1.14-2) ... Setting up libxcb-present0:amd64 (1.14-2) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up libvorbisfile3:amd64 (1.3.6-2ubuntu1) ... Setting up libasan5:amd64 (9.4.0-1ubuntu1~20.04.1) ... Setting up libfreetype6:amd64 (2.10.1-2ubuntu0.2) ... Setting up libxcb-sync1:amd64 (1.14-2) ... Setting up libllvm12:amd64 (1:12.0.0-3ubuntu1~20.04.5) ... Setting up libgssapi-krb5-2:amd64 (1.17-6ubuntu4.1) ... Setting up libgdbm-compat4:amd64 (1.18.1-5) ... Setting up libssh-4:amd64 (0.9.3-2ubuntu2.2) ... Setting up librubberband2:amd64 (1.8.2-1build1) ... Setting up libsndio7.0:amd64 (1.5.0-3) ... Setting up libxcb-dri2-0:amd64 (1.14-2) ... Setting up libjack-jackd2-0:amd64 (1.9.12~dfsg-2ubuntu2) ... Setting up libdrm2:amd64 (2.4.107-8ubuntu1~20.04.2) ... Setting up libflite1:amd64 (2.1-release-3) ... Setting up libva-drm2:amd64 (2.7.0-2) ... Setting up libsord-0-0:amd64 (0.16.4-1) ... Setting up libwayland-cursor0:amd64 (1.18.0-1ubuntu0.1) ... Setting up libxcb-randr0:amd64 (1.14-2) ... Setting up libsratom-0-0:amd64 (0.6.4-1) ... Setting up cpp-9 (9.4.0-1ubuntu1~20.04.1) ... Setting up libperl5.30:amd64 (5.30.0-9ubuntu0.3) ... Setting up libcurl4:amd64 (7.68.0-1ubuntu2.14) ... Setting up libc6-dev:amd64 (2.31-0ubuntu9.9) ... Setting up libx11-6:amd64 (2:1.6.9-2ubuntu1.2) ... Setting up libharfbuzz0b:amd64 (2.6.4-1ubuntu4.2) ... Setting up libtiff5:amd64 (4.1.0+git191117-2ubuntu0.20.04.7) ... Setting up curl (7.68.0-1ubuntu2.14) ... Setting up libfontconfig1:amd64 (2.13.1-2ubuntu3) ... Setting up libsndfile1:amd64 (1.0.28-7ubuntu0.1) ... Setting up liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5ubuntu0.20.04.5) ... Setting up libopenmpt0:amd64 (0.4.11-1build1) ... Setting up libxmuu1:amd64 (2:1.1.3-0ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.34-6ubuntu1.4) ... Setting up libdrm-amdgpu1:amd64 (2.4.107-8ubuntu1~20.04.2) ... Setting up libssh-gcrypt-4:amd64 (0.9.3-2ubuntu2.2) ... Setting up libvorbis-dev:amd64 (1.3.6-2ubuntu1) ... Setting up libxcb-dri3-0:amd64 (1.14-2) ... Setting up mesa-vulkan-drivers:amd64 (21.2.6-0ubuntu0.1~20.04.2) ... Setting up fontconfig (2.13.1-2ubuntu3) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.107-8ubuntu1~20.04.2) ... Setting up libzmq5:amd64 (4.3.2-2ubuntu1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libpulse0:amd64 (1:13.99.1-1ubuntu3.13) ... Setting up libdrm-radeon1:amd64 (2.4.107-8ubuntu1~20.04.2) ... Setting up openssh-client (1:8.2p1-4ubuntu0.5) ... Setting up libpango-1.0-0:amd64 (1.44.7-2ubuntu4) ... Setting up libdrm-intel1:amd64 (2.4.107-8ubuntu1~20.04.2) ... Setting up libgl1-mesa-dri:amd64 (21.2.6-0ubuntu0.1~20.04.2) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.68.0-1ubuntu2.14) ... Setting up libopenal1:amd64 (1:1.19.1-1) ... Setting up binutils (2.34-6ubuntu1.4) ... Setting up libcairo2:amd64 (1.16.0-4ubuntu1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1build1) ... Setting up libgcc-9-dev:amd64 (9.4.0-1ubuntu1~20.04.1) ... Setting up perl (5.30.0-9ubuntu0.3) ... Setting up libass9:amd64 (1:0.14.0-2) ... Setting up libxfixes3:amd64 (1:5.0.3-2) ... Setting up shared-mime-info (1.15-1) ... Setting up libxinerama1:amd64 (2:1.1.4-2) ... Setting up libxv1:amd64 (2:1.0.11-1) ... Setting up libxrandr2:amd64 (2:1.5.2-0ubuntu1) ... Setting up libdpkg-perl (1.19.7ubuntu3.2) ... Setting up xauth (1:1.1-0ubuntu1) ... Setting up libvdpau1:amd64 (1.3-1ubuntu2) ... Setting up cpp (4:9.3.0-1ubuntu2) ... Setting up libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... Setting up libcairo-gobject2:amd64 (1.16.0-4ubuntu1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up mesa-va-drivers:amd64 (21.2.6-0ubuntu0.1~20.04.2) ... Setting up libpangoft2-1.0-0:amd64 (1.44.7-2ubuntu4) ... Setting up libbluray2:amd64 (1:1.2.0-1) ... Setting up libva-x11-2:amd64 (2.7.0-2) ... Setting up i965-va-driver:amd64 (2.4.0-0ubuntu1) ... Setting up libpangocairo-1.0-0:amd64 (1.44.7-2ubuntu4) ... Setting up gcc-9 (9.4.0-1ubuntu1~20.04.1) ... Setting up mesa-vdpau-drivers:amd64 (21.2.6-0ubuntu0.1~20.04.2) ... Setting up libglx-mesa0:amd64 (21.2.6-0ubuntu0.1~20.04.2) ... Setting up libstdc++-9-dev:amd64 (9.4.0-1ubuntu1~20.04.1) ... Setting up libxi6:amd64 (2:1.7.10-0ubuntu1) ... Setting up libglx0:amd64 (1.3.2-1~ubuntu0.20.04.2) ... Setting up libfile-fcntllock-perl (0.22-3build4) ... Setting up libxcursor1:amd64 (1:1.2.0-2) ... Setting up libavutil56:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up gcc (4:9.3.0-1ubuntu2) ... Setting up liberror-perl (0.17029-1) ... Setting up libgl1:amd64 (1.3.2-1~ubuntu0.20.04.2) ... Setting up va-driver-all:amd64 (2.7.0-2) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.40.0+dfsg-3ubuntu0.4) ... Setting up libpostproc55:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up pkg-config (0.29.1-0ubuntu4) ... Setting up git (1:2.25.1-1ubuntu3.6) ... Setting up g++-9 (9.4.0-1ubuntu1~20.04.1) ... Setting up vdpau-driver-all:amd64 (1.3-1ubuntu2) ... Setting up g++ (4:9.3.0-1ubuntu2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/c++.1.gz because associated file /usr/share/man/man1/g++.1.gz (of link group c++) doesn't exist Setting up libgdk-pixbuf2.0-bin (2.40.0+dfsg-3ubuntu0.4) ... Setting up libswscale5:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up libsdl2-2.0-0:amd64 (2.0.10+dfsg1-3) ... Setting up git-lfs (2.9.2-1) ... Setting up libswresample3:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up libavresample4:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up librsvg2-2:amd64 (2.48.9-1ubuntu0.20.04.1) ... Setting up libsndfile1-dev (1.0.28-7ubuntu0.1) ... Setting up librsvg2-common:amd64 (2.48.9-1ubuntu0.20.04.1) ... Setting up libavcodec58:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up libchromaprint1:amd64 (1.4.3-3build1) ... Setting up libavformat58:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up libavfilter7:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up libavdevice58:amd64 (7:4.2.7-0ubuntu0.1) ... Setting up ffmpeg (7:4.2.7-0ubuntu0.1) ... Processing triggers for libc-bin (2.31-0ubuntu9.9) ... Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.40.0+dfsg-3ubuntu0.4) ... Removing intermediate container f8ac9602ff71 ---> 33cceae16590 Step 4/8 : ENV MAMBA_ROOT_PREFIX=/opt/conda ---> Running in 048e5e69d55f Removing intermediate container 048e5e69d55f ---> 83415dd0cefc Step 5/8 : ENV PATH=/opt/conda/bin:$PATH ---> Running in 242ee32f262b Removing intermediate container 242ee32f262b ---> 64d5fdaa745f Step 6/8 : ENV LD_LIBRARY_PATH="/opt/conda/lib:${LD_LIBRARY_PATH}" ---> Running in 09d9892cf92f Removing intermediate container 09d9892cf92f ---> 8f94c9adf20f Step 7/8 : RUN curl -L https://micromamba.snakepit.net/api/micromamba/linux-64/latest | tar -xj "bin/micromamba" && touch /root/.bashrc && ./bin/micromamba shell init -s bash -p /opt/conda && grep -v '[ -z "\$PS1" ] && return' /root/.bashrc > /opt/conda/bashrc ---> Running in bef9ad7c6c1f % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 3991 0 3991 0 0 8280 0 --:--:-- --:--:-- --:--:-- 8280 100 5547k 100 5547k 0 0 4513k 0 0:00:01 0:00:01 --:--:-- 4513k Modifying RC file "/root/.bashrc" Generating config for root prefix "/opt/conda" Setting mamba executable to: "/usr/bin/micromamba"Adding (or replacing) the following in your "/root/.bashrc" file # >>> mamba initialize >>> # !! Contents within this block are managed by 'mamba init' !! export MAMBA_EXE="/usr/bin/micromamba"; export MAMBA_ROOT_PREFIX="/opt/conda"; __mamba_setup="$("$MAMBA_EXE" shell hook --shell bash --prefix "$MAMBA_ROOT_PREFIX" 2> /dev/null)" if [ $? -eq 0 ]; then eval "$__mamba_setup" else if [ -f "/opt/conda/etc/profile.d/micromamba.sh" ]; then . "/opt/conda/etc/profile.d/micromamba.sh" else export PATH="/opt/conda/bin:$PATH" # extra space after export prevents interference from conda init fi fi unset __mamba_setup # <<< mamba initialize <<< Removing intermediate container bef9ad7c6c1f ---> 30e166f2ef0b Step 8/8 : RUN micromamba install -y -n base -c conda-forge -c nvidia -c pytorch python=3.9.13 nvidia::cudatoolkit=11.6 pytorch::pytorch=1.13.0=py3.9_cuda11.6* ---> Running in bf9cae2a9d62 __ __ ______ ___ ____ _____ ___ / /_ ____ _ / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/ / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ / / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/ /_/ Transaction Prefix: /opt/conda Updating specs: - python=3.9.13 - nvidia::cudatoolkit=11.6 - pytorch::pytorch==1.13.0[build=py3.9_cuda11.6*] Package Version Build Channel Size ─────────────────────────────────────────────────────────────────────────────────────────────────────── Install: ─────────────────────────────────────────────────────────────────────────────────────────────────────── + _libgcc_mutex 0.1 conda_forge conda-forge/linux-64 3kB + _openmp_mutex 4.5 2_kmp_llvm conda-forge/linux-64 6kB + blas 2.116 mkl conda-forge/linux-64 13kB + blas-devel 3.9.0 16_linux64_mkl conda-forge/linux-64 13kB + bzip2 1.0.8 h7f98852_4 conda-forge/linux-64 496kB + ca-certificates 2022.12.7 ha878542_0 conda-forge/linux-64 146kB + cuda 11.6.1 0 nvidia/linux-64 1kB + cuda-cccl 11.6.55 hf6102b2_0 nvidia/linux-64 1MB + cuda-command-line-tools 11.6.2 0 nvidia/linux-64 1kB + cuda-compiler 11.6.2 0 nvidia/linux-64 1kB + cuda-cudart 11.6.55 he381448_0 nvidia/linux-64 198kB + cuda-cudart-dev 11.6.55 h42ad0f4_0 nvidia/linux-64 1MB + cuda-cuobjdump 11.6.124 h2eeebcb_0 nvidia/linux-64 138kB + cuda-cupti 11.6.124 h86345e5_0 nvidia/linux-64 23MB + cuda-cuxxfilt 11.6.124 hecbf4f6_0 nvidia/linux-64 290kB + cuda-driver-dev 11.6.55 0 nvidia/linux-64 17kB + cuda-gdb 12.0.90 0 nvidia/linux-64 6MB + cuda-libraries 11.6.1 0 nvidia/linux-64 2kB + cuda-libraries-dev 11.6.1 0 nvidia/linux-64 2kB + cuda-memcheck 11.8.86 0 nvidia/linux-64 172kB + cuda-nsight 12.0.78 0 nvidia/linux-64 119MB + cuda-nsight-compute 12.0.0 0 nvidia/linux-64 1kB + cuda-nvcc 11.6.124 hbba6d2d_0 nvidia/linux-64 44MB + cuda-nvdisasm 12.0.76 0 nvidia/linux-64 50MB + cuda-nvml-dev 11.6.55 haa9ef22_0 nvidia/linux-64 67kB + cuda-nvprof 12.0.90 0 nvidia/linux-64 5MB + cuda-nvprune 11.6.124 he22ec0a_0 nvidia/linux-64 66kB + cuda-nvrtc 11.6.124 h020bade_0 nvidia/linux-64 18MB + cuda-nvrtc-dev 11.6.124 h249d397_0 nvidia/linux-64 18MB + cuda-nvtx 11.6.124 h0630a44_0 nvidia/linux-64 59kB + cuda-nvvp 12.0.90 0 nvidia/linux-64 120MB + cuda-runtime 11.6.1 0 nvidia/linux-64 1kB + cuda-samples 11.6.101 h8efea70_0 nvidia/linux-64 5kB + cuda-sanitizer-api 12.0.90 0 nvidia/linux-64 17MB + cuda-toolkit 11.6.1 0 nvidia/linux-64 1kB + cuda-tools 11.6.1 0 nvidia/linux-64 1kB + cuda-visual-tools 11.6.1 0 nvidia/linux-64 1kB + cudatoolkit 11.6.0 habf752d_9 nvidia/linux-64 861MB + gds-tools 1.5.0.59 0 nvidia/linux-64 43MB + icu 70.1 h27087fc_0 conda-forge/linux-64 14MB + ld_impl_linux-64 2.39 hcc3a1bd_1 conda-forge/linux-64 691kB + libblas 3.9.0 16_linux64_mkl conda-forge/linux-64 13kB + libcblas 3.9.0 16_linux64_mkl conda-forge/linux-64 13kB + libcublas 11.9.2.110 h5e84587_0 nvidia/linux-64 315MB + libcublas-dev 11.9.2.110 h5c901ab_0 nvidia/linux-64 326MB + libcufft 10.7.1.112 hf425ae0_0 nvidia/linux-64 98MB + libcufft-dev 10.7.1.112 ha5ce4c0_0 nvidia/linux-64 207MB + libcufile 1.5.0.59 0 nvidia/linux-64 772kB + libcufile-dev 1.5.0.59 0 nvidia/linux-64 13kB + libcurand 10.3.1.50 0 nvidia/linux-64 54MB + libcurand-dev 10.3.1.50 0 nvidia/linux-64 460kB + libcusolver 11.3.4.124 h33c3c4e_0 nvidia/linux-64 91MB + libcusparse 11.7.2.124 h7538f96_0 nvidia/linux-64 169MB + libcusparse-dev 11.7.2.124 hbbe9722_0 nvidia/linux-64 345MB + libffi 3.4.2 h7f98852_5 conda-forge/linux-64 58kB + libgcc-ng 12.2.0 h65d4601_19 conda-forge/linux-64 954kB + libgfortran-ng 12.2.0 h69a702a_19 conda-forge/linux-64 23kB + libgfortran5 12.2.0 h337968e_19 conda-forge/linux-64 2MB + libhwloc 2.8.0 h32351e8_1 conda-forge/linux-64 3MB + libiconv 1.17 h166bdaf_0 conda-forge/linux-64 1MB + liblapack 3.9.0 16_linux64_mkl conda-forge/linux-64 13kB + liblapacke 3.9.0 16_linux64_mkl conda-forge/linux-64 13kB + libnpp 11.6.3.124 hd2722f0_0 nvidia/linux-64 124MB + libnpp-dev 11.6.3.124 h3c42840_0 nvidia/linux-64 121MB + libnsl 2.0.0 h7f98852_0 conda-forge/linux-64 31kB + libnvjpeg 11.6.2.124 hd473ad6_0 nvidia/linux-64 2MB + libnvjpeg-dev 11.6.2.124 hb5906b9_0 nvidia/linux-64 2MB + libsqlite 3.40.0 h753d276_0 conda-forge/linux-64 810kB + libstdcxx-ng 12.2.0 h46fd767_19 conda-forge/linux-64 4MB + libuuid 2.32.1 h7f98852_1000 conda-forge/linux-64 28kB + libxml2 2.10.3 h7463322_0 conda-forge/linux-64 773kB + libzlib 1.2.13 h166bdaf_4 conda-forge/linux-64 66kB + llvm-openmp 15.0.6 he0ac6c6_0 conda-forge/linux-64 3MB + mkl 2022.1.0 h84fe81f_915 conda-forge/linux-64 209MB + mkl-devel 2022.1.0 ha770c72_916 conda-forge/linux-64 26kB + mkl-include 2022.1.0 h84fe81f_915 conda-forge/linux-64 763kB + ncurses 6.3 h27087fc_1 conda-forge/linux-64 1MB + nsight-compute 2022.4.0.15 0 nvidia/linux-64 801MB + openssl 3.0.7 h0b41bf4_1 conda-forge/linux-64 3MB + pip 22.3.1 pyhd8ed1ab_0 conda-forge/noarch 2MB + python 3.9.13 h2660328_0_cpython conda-forge/linux-64 28MB + pytorch 1.13.0 py3.9_cuda11.6_cudnn8.3.2_0 pytorch/linux-64 1GB + pytorch-cuda 11.6 h867d48c_1 pytorch/noarch 3kB + pytorch-mutex 1.0 cuda pytorch/noarch 3kB + readline 8.1.2 h0f457ee_0 conda-forge/linux-64 298kB + setuptools 65.5.1 pyhd8ed1ab_0 conda-forge/noarch 748kB + sqlite 3.40.0 h4ff8645_0 conda-forge/linux-64 820kB + tbb 2021.7.0 h924138e_1 conda-forge/linux-64 2MB + tk 8.6.12 h27826a3_0 conda-forge/linux-64 3MB + typing_extensions 4.4.0 pyha770c72_0 conda-forge/noarch 30kB + tzdata 2022g h191b570_0 conda-forge/noarch 108kB + wheel 0.38.4 pyhd8ed1ab_0 conda-forge/noarch 33kB + xz 5.2.6 h166bdaf_0 conda-forge/linux-64 418kB Summary: Install: 93 packages Total download: 6GB ─────────────────────────────────────────────────────────────────────────────────────────────────────── Transaction starting Linking pytorch-mutex-1.0-cuda Linking mkl-include-2022.1.0-h84fe81f_915 Linking _libgcc_mutex-0.1-conda_forge Linking libgfortran5-12.2.0-h337968e_19 Linking libstdcxx-ng-12.2.0-h46fd767_19 Linking ld_impl_linux-64-2.39-hcc3a1bd_1 Linking ca-certificates-2022.12.7-ha878542_0 Linking libgcc-ng-12.2.0-h65d4601_19 Linking libzlib-1.2.13-h166bdaf_4 Linking llvm-openmp-15.0.6-he0ac6c6_0 Linking _openmp_mutex-4.5-2_kmp_llvm Linking libgfortran-ng-12.2.0-h69a702a_19 Linking libuuid-2.32.1-h7f98852_1000 Linking libiconv-1.17-h166bdaf_0 Linking icu-70.1-h27087fc_0 Linking xz-5.2.6-h166bdaf_0 Linking libsqlite-3.40.0-h753d276_0 Linking openssl-3.0.7-h0b41bf4_1 Linking ncurses-6.3-h27087fc_1 Linking libffi-3.4.2-h7f98852_5 Linking bzip2-1.0.8-h7f98852_4 Linking tk-8.6.12-h27826a3_0 Linking libnsl-2.0.0-h7f98852_0 Linking libxml2-2.10.3-h7463322_0 Linking readline-8.1.2-h0f457ee_0 Linking libhwloc-2.8.0-h32351e8_1 Linking sqlite-3.40.0-h4ff8645_0 Linking tbb-2021.7.0-h924138e_1 Linking mkl-2022.1.0-h84fe81f_915 Linking mkl-devel-2022.1.0-ha770c72_916 Linking libblas-3.9.0-16_linux64_mkl Linking liblapack-3.9.0-16_linux64_mkl Linking libcblas-3.9.0-16_linux64_mkl Linking liblapacke-3.9.0-16_linux64_mkl Linking blas-devel-3.9.0-16_linux64_mkl Linking blas-2.116-mkl Linking tzdata-2022g-h191b570_0 Linking cuda-cudart-11.6.55-he381448_0 Linking libcufft-10.7.1.112-hf425ae0_0 Linking cuda-nvml-dev-11.6.55-haa9ef22_0 Linking cuda-samples-11.6.101-h8efea70_0 Linking cuda-driver-dev-11.6.55-0 Linking cuda-nsight-12.0.78-0 Linking nsight-compute-2022.4.0.15-0 warning libmamba [nsight-compute-2022.4.0.15-0] The following files were already present in the environment: - LICENSE Linking cuda-cupti-11.6.124-h86345e5_0 warning libmamba [cuda-cupti-11.6.124-h86345e5_0] The following files were already present in the environment: - LICENSE Linking cuda-nvtx-11.6.124-h0630a44_0 warning libmamba [cuda-nvtx-11.6.124-h0630a44_0] The following files were already present in the environment: - LICENSE Linking libcufile-1.5.0.59-0 warning libmamba Invalid package cache, could not read 'paths.json' from '/opt/conda/pkgs/libcufile-1.5.0.59-0' error libmamba Cannot find a valid extracted directory cache for 'libcufile-1.5.0.59-0.tar.bz2' critical libmamba Package cache error. The command '/bin/sh -c micromamba install -y -n base -c conda-forge -c nvidia -c pytorch python=3.9.13 nvidia::cudatoolkit=11.6 pytorch::pytorch=1.13.0=py3.9_cuda11.6*' returned a non-zero code: 1 ```