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The Fast Cross-Platform Package Manager
https://mamba.readthedocs.io
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The lock ['/public/home/yqming/miniconda3/pkgs/cache.pid299279.conda_lock'] was found. Wait for it to finish before continuing. #3227

Open wangguiqian opened 5 months ago

wangguiqian commented 5 months ago

Troubleshooting docs

Anaconda default channels

How did you install Mamba?

Micromamba

Search tried in issue tracker

miniconda3/pkgs/cache.pid299279.conda_lock'] was found

Latest version of Mamba

Tried in Conda?

I have this problem with Conda as well, without using Mamba

Describe your issue

(work) [yqming@login02 ~]$ mamba create -n HiCLift cooler pairtools kerneltree cxx-compiler

              __    __    __    __
             /  \  /  \  /  \  /  \
            /    \/    \/    \/    \

███████████████/ /██/ /██/ /██/ /████████████████████████ / / \ / \ / \ / \ _ / / _/ _/ _/ \ o _, / _/ ___/ ` |/ ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝

    mamba (0.15.3) supported by @QuantStack

    GitHub:  https://github.com/mamba-org/mamba
    Twitter: https://twitter.com/QuantStack

█████████████████████████████████████████████████████████████

Looking for: ['cooler', 'pairtools', 'kerneltree', 'cxx-compiler']

Exceeded max retries, giving up LockError: LOCKERROR: It looks like conda is already doing something. The lock ['/public/home/yqming/miniconda3/pkgs/cache.pid299279.conda_lock'] was found. Wait for it to finish before continuing. If you are sure that conda is not running, remove it and try again. You can also use: $ conda clean --lock

(work) [yqming@login02 ~]$ conda clean -l
usage: conda [-h] [-V] command ... conda: error: unrecognized arguments: -l

mamba info / micromamba info

(work) [yqming@login02 ~]$ mamba info                                                                                                                

                  __    __    __    __
                 /  \  /  \  /  \  /  \
                /    \/    \/    \/    \
███████████████/  /██/  /██/  /██/  /████████████████████████
              /  / \   / \   / \   / \  \____
             /  /   \_/   \_/   \_/   \    o \__,
            / _/                       \_____/  `
            |/
        ███╗   ███╗ █████╗ ███╗   ███╗██████╗  █████╗
        ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗
        ██╔████╔██║███████║██╔████╔██║██████╔╝███████║
        ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║
        ██║ ╚═╝ ██║██║  ██║██║ ╚═╝ ██║██████╔╝██║  ██║
        ╚═╝     ╚═╝╚═╝  ╚═╝╚═╝     ╚═╝╚═════╝ ╚═╝  ╚═╝

        mamba (0.15.3) supported by @QuantStack

        GitHub:  https://github.com/mamba-org/mamba
        Twitter: https://twitter.com/QuantStack

█████████████████████████████████████████████████████████████

     active environment : work
    active env location : /public/home/yqming/miniconda3/envs/work
            shell level : 2
       user config file : /public/home/yqming/.condarc
 populated config files : /public/home/yqming/.condarc
          conda version : 4.10.3
    conda-build version : not installed
         python version : 3.8.10.final.0
       virtual packages : __linux=3.10.0=0
                          __glibc=2.17=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /public/home/yqming/miniconda3  (writable)
      conda av data dir : /public/home/yqming/miniconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/noarch
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/noarch
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/linux-64
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/noarch
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/linux-64
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/noarch
          package cache : /public/home/yqming/miniconda3/pkgs
                          /public/home/yqming/.conda/pkgs
       envs directories : /public/home/yqming/miniconda3/envs
                          /public/home/yqming/.conda/envs
               platform : linux-64
             user-agent : conda/4.10.3 requests/2.25.1 CPython/3.8.10 Linux/3.10.0-862.el7.x86_64 centos/7.5.1804 glibc/2.17
                UID:GID : 1582:1036
             netrc file : None
           offline mode : False

(work) [yqming@login02 ~]$

Logs

mamba create -n HiCLift cooler pairtools kerneltree cxx-compiler

environment.yml

no

~/.condarc

(work) [yqming@login02 ~]$ cat ~/.condarc 
channels:
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/
show_channel_urls: true