Troubleshooting docs

[X] My problem is not solved in the Troubleshooting docs

Anaconda default channels

[X] I do NOT use the Anaconda default channels (pkgs/* etc.)

How did you install Mamba?

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memba install errors

Latest version of Mamba

[X] My problem is not solved with the latest version

Tried in Conda?

I have this problem with Conda as well, without using Mamba

Describe your issue

(work) [gqwang@mn02 ~]$ mamba install r

              __    __    __    __
             /  \  /  \  /  \  /  \
            /    \/    \/    \/    \

███████████████/ /██/ /██/ /██/ /████████████████████████ / / \ / \ / \ / \ _ / / _/ _/ _/ \ o _, / _/ ___/ ` |/ ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝

    mamba (0.18.2) supported by @QuantStack

    GitHub:  https://github.com/mamba-org/mamba
    Twitter: https://twitter.com/QuantStack

█████████████████████████████████████████████████████████████

Looking for: ['r']

anaconda/pkgs/main/linux [====================] (00m:00s) No change
anaconda/cloud/bioconda/ [====================] (00m:00s) No change
anaconda/pkgs/main/linux [====================] (00m:00s) 404 Failed

>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

Traceback (most recent call last):
  File "/public/home/gqwang/miniconda3/lib/python3.7/site-packages/conda/exceptions.py", line 1082, in __call__
    return func(*args, **kwargs)
  File "/public/home/gqwang/miniconda3/lib/python3.7/site-packages/mamba/mamba.py", line 917, in exception_converter
    raise e
  File "/public/home/gqwang/miniconda3/lib/python3.7/site-packages/mamba/mamba.py", line 911, in exception_converter
    exit_code = _wrapped_main(*args, **kwargs)
  File "/public/home/gqwang/miniconda3/lib/python3.7/site-packages/mamba/mamba.py", line 869, in _wrapped_main
    result = do_call(args, p)
  File "/public/home/gqwang/miniconda3/lib/python3.7/site-packages/mamba/mamba.py", line 734, in do_call
    exit_code = install(args, parser, "install")
  File "/public/home/gqwang/miniconda3/lib/python3.7/site-packages/mamba/mamba.py", line 486, in install
    index = load_channels(pool, channels, repos)
  File "/public/home/gqwang/miniconda3/lib/python3.7/site-packages/mamba/utils.py", line 128, in load_channels
    use_cache=use_cache,
  File "/public/home/gqwang/miniconda3/lib/python3.7/site-packages/mamba/utils.py", line 103, in get_index
    is_downloaded = dlist.download(True)
RuntimeError: Multi-download failed.

$ /public/home/gqwang/miniconda3/condabin/mamba install r

environment variables: CIO_TEST= CONDA_DEFAULT_ENV=work CONDA_EXE=/public/home/gqwang/miniconda3/bin/conda CONDA_PREFIX=/public/home/gqwang/miniconda3/envs/work CONDA_PREFIX_1=/public/home/gqwang/miniconda3 CONDA_PROMPT_MODIFIER=(work) CONDA_PYTHON_EXE=/public/home/gqwang/miniconda3/bin/python CONDA_ROOT=/public/home/gqwang/miniconda3 CONDA_SHLVL=2 CPATH= CURL_CA_BUNDLE= FPATH= LD_LIBRARY_PATH= LIBRARY_PATH= MANPATH= MIC_LD_LIBRARY_PATH= MODULEPATH=/public/home/gqwang/.modulefiles:/public/home/software/opt/bio/modules /all/:/public/home/software/opt/database/:/public/home/software/opt/ge nomes/ NLSPATH= PATH=/public/home/gqwang/miniconda3/envs/work/bin:/public/home/gqwang/minic onda3/condabin:/public/home/software/opt/moudles/Modules/3.2.10/bin:/o pt/ibm/lsf/10.1/linux3.10-glibc2.17-x86_64/bin:/usr/local/bin:/bin:/us r/bin:/usr/local/sbin:/usr/sbin:/public/home/gqwang/miniconda3/bin:/pu blic/home/gqwang/Software/RNAFramework:/public/home/gqwang/Software/Fu nGAP QT_PLUGIN_PATH=/usr/lib64/kde4/plugins:/usr/lib/kde4/plugins REQUESTS_CA_BUNDLE= SSL_CERT_FILE=

 active environment : work
active env location : /public/home/gqwang/miniconda3/envs/work
        shell level : 2
   user config file : /public/home/gqwang/.condarc

populated config files : /public/home/gqwang/.condarc conda version : 4.12.0 conda-build version : not installed python version : 3.7.7.final.0 virtual packages : linux=3.10.0=0 glibc=2.17=0 unix=0=0 archspec=1=x86_64 base environment : /public/home/gqwang/miniconda3 (writable) conda av data dir : /public/home/gqwang/miniconda3/etc/conda conda av metadata url : None channel URLs : https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/linux-64 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/noarch https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/noarch https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/noarch https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /public/home/gqwang/miniconda3/pkgs /public/home/gqwang/.conda/pkgs envs directories : /public/home/gqwang/miniconda3/envs /public/home/gqwang/.conda/envs platform : linux-64 user-agent : conda/4.12.0 requests/2.23.0 CPython/3.7.7 Linux/3.10.0-862.el7.x86_64 centos/7.5.1804 glibc/2.17 UID:GID : 1622:1061 netrc file : None offline mode : False

An unexpected error has occurred. Conda has prepared the above report.

(work) [gqwang@mn02 ~]$ mamba install mamba=0.18 -n base

              __    __    __    __
             /  \  /  \  /  \  /  \
            /    \/    \/    \/    \

    mamba (0.15.3) supported by @QuantStack

    GitHub:  https://github.com/mamba-org/mamba
    Twitter: https://twitter.com/QuantStack

█████████████████████████████████████████████████████████████

Looking for: ['mamba=0.18']

anaconda/cloud/bioconda/ [====================] (00m:00s) No change
anaconda/pkgs/main/linux [====================] (00m:00s) No change
anaconda/cloud/bioconda/ [====================] (00m:00s) No change
anaconda/cloud/conda-for [====================] (00m:00s) No change
anaconda/pkgs/main/noarc [====================] (00m:00s) No change
anaconda/cloud/conda-for [====================] (00m:00s) No change
pkgs/main/linux-64 [====================] (00m:00s) No change
pkgs/main/noarch [====================] (00m:00s) No change
pkgs/r/linux-64 [====================] (00m:00s) No change
pkgs/r/noarch [====================] (00m:00s) No change

Pinned packages:

python 3.7.*

Transaction

Prefix: /public/home/gqwang/miniconda3

Updating specs:

mamba=0.18
ca-certificates
certifi
openssl

Package Version Build Channel Size ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── Install: ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
- libmamba 0.18.2 h3985d26_0 mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 1 MB
- libmambapy 0.18.2 py37hab1676c_0 mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 315 KB
- libzlib 1.2.13 hd590300_5 mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 Cached
- pybind11-abi 4 hd8ed1ab_3 mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/noarch 10 KB
- yaml-cpp 0.6.3 he1b5a44_4 mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 208 KB
Change: ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
- _libgcc_mutex 0.1 main installed
- _libgcc_mutex 0.1 conda_forge mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 Cached
Upgrade: ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
- c-ares 1.11.0 h470a237_1 installed
- c-ares 1.27.0 hd590300_0 mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 Cached
- libcurl 7.78.0 h0b77cf5_0 installed
- libcurl 7.86.0 h7bff187_1 mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 348 KB
- libgcc-ng 11.2.0 h1234567_1 installed
- libgcc-ng 13.2.0 h807b86a_5 mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 Cached
- libgomp 11.2.0 h1234567_1 installed
- libgomp 13.2.0 h807b86a_5 mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 Cached
- libnghttp2 1.41.0 hab1572f_1 installed
- libnghttp2 1.51.0 hdcd2b5c_0 mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 608 KB
- mamba 0.15.3 py37h7f483ca_0 installed
- mamba 0.18.2 py37h6dacc13_0 mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 41 KB
- openssl 1.1.1o h166bdaf_0 installed
- openssl 1.1.1w hd590300_0 mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 2 MB
- zlib 1.2.11 h7b6447c_3 installed
- zlib 1.2.13 hd590300_5 mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 Cached
Downgrade: ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
- _openmp_mutex 5.1 1_gnu installed
- _openmp_mutex 4.5 2_gnu mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 Cached
Summary:

Install: 5 packages Change: 1 packages Upgrade: 8 packages Downgrade: 1 packages

Total download: 5 MB

─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────

Confirm changes: [Y/n] y Downloading [====> ] (00m:00s) 1.85 MB/s
Extracting [> ] (--:--)
ERROR File not valid: file size doesn't match expectation "/public/home/gqwang/miniconda3/pkgs/yaml-cpp-0.6.3-he1b5a44_4.tar.bz2" Expected: 213138 File size validation error.
Downloading [=====> ] (00m:00s) 1.83 MB/s
Extracting [> ] (--:--)
ERROR File not valid: file size doesn't match expectation "/public/home/gqwang/miniconda3/pkgs/mamba-0.18.2-py37h6dacc13_0.tar.bz2" Expected: 41797 File size validation error.
Downloading [======> ] (00m:00s) 2.00 MB/s
Extracting [> ] (--:--)
ERROR File not valid: file size doesn't match expectation "/public/home/gqwang/miniconda3/pkgs/pybind11-abi-4-hd8ed1ab_3.tar.bz2" Expected: 9906 File size validation error.
Downloading [============> ] (00m:00s) 3.48 MB/s
Extracting [> ] (--:--)
ERROR File not valid: file size doesn't match expectation "/public/home/gqwang/miniconda3/pkgs/libmambapy-0.18.2-py37hab1676c_0.tar.bz2" Expected: 322761 File size validation error.
Finished libnghttp2 (00m:00s) 608 KB 2 MB/s
Downloading [============================================> ] (00m:00s) 5.60 MB/s
Extracting [> ] (--:--)
ERROR File not valid: file size doesn't match expectation "/public/home/gqwang/miniconda3/pkgs/libcurl-7.86.0-h7bff187_1.tar.bz2" Expected: 356854 File size validation error.
Downloading [====================================================================================================] (00m:00s) 10.89 MB/s
Extracting [============> ] (00m:00s) 1 / 8
ERROR File not valid: file size doesn't match expectation "/public/home/gqwang/miniconda3/pkgs/libmamba-0.18.2-h3985d26_0.tar.bz2" Expected: 1534565 File size validation error.
Finished openssl (00m:00s) 2 MB 4 MB/s
Downloading [====================================================================================================] (00m:00s) 10.89 MB/s
Extracting [=========================> ] (00m:00s) 2 / 8

>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

Traceback (most recent call last):
  File "/public/home/gqwang/miniconda3/lib/python3.7/site-packages/conda/exceptions.py", line 1082, in __call__
    return func(*args, **kwargs)
  File "/public/home/gqwang/miniconda3/lib/python3.7/site-packages/mamba/mamba.py", line 927, in exception_converter
    raise e
  File "/public/home/gqwang/miniconda3/lib/python3.7/site-packages/mamba/mamba.py", line 921, in exception_converter
    exit_code = _wrapped_main(*args, **kwargs)
  File "/public/home/gqwang/miniconda3/lib/python3.7/site-packages/mamba/mamba.py", line 879, in _wrapped_main
    result = do_call(args, p)
  File "/public/home/gqwang/miniconda3/lib/python3.7/site-packages/mamba/mamba.py", line 757, in do_call
    exit_code = install(args, parser, "install")
  File "/public/home/gqwang/miniconda3/lib/python3.7/site-packages/mamba/mamba.py", line 613, in install
    downloaded = transaction.prompt(repos)
RuntimeError: Found incorrect download: yaml-cpp. Aborting

$ /public/home/gqwang/miniconda3/condabin/mamba install mamba=0.18 -n base

 active environment : work
active env location : /public/home/gqwang/miniconda3/envs/work
        shell level : 2
   user config file : /public/home/gqwang/.condarc

populated config files : /public/home/gqwang/.condarc conda version : 4.12.0 conda-build version : not installed python version : 3.7.7.final.0 virtual packages : linux=3.10.0=0 glibc=2.17=0 unix=0=0 archspec=1=x86_64 base environment : /public/home/gqwang/miniconda3 (writable) conda av data dir : /public/home/gqwang/miniconda3/etc/conda conda av metadata url : None channel URLs : https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/noarch https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/noarch https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/linux-64 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/noarch https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /public/home/gqwang/miniconda3/pkgs /public/home/gqwang/.conda/pkgs envs directories : /public/home/gqwang/miniconda3/envs /public/home/gqwang/.conda/envs platform : linux-64 user-agent : conda/4.12.0 requests/2.23.0 CPython/3.7.7 Linux/3.10.0-862.el7.x86_64 centos/7.5.1804 glibc/2.17 UID:GID : 1622:1061 netrc file : None offline mode : False

An unexpected error has occurred. Conda has prepared the above report.

mamba info / micromamba info

(base) [gqwang@mn02 ~]$ conda info

     active environment : base
    active env location : /public/home/gqwang/miniconda3
            shell level : 1
       user config file : /public/home/gqwang/.condarc
 populated config files : /public/home/gqwang/.condarc
          conda version : 4.12.0
    conda-build version : not installed
         python version : 3.7.7.final.0
       virtual packages : __linux=3.10.0=0
                          __glibc=2.17=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /public/home/gqwang/miniconda3  (writable)
      conda av data dir : /public/home/gqwang/miniconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/linux-64
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/noarch
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/noarch
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /public/home/gqwang/miniconda3/pkgs
                          /public/home/gqwang/.conda/pkgs
       envs directories : /public/home/gqwang/miniconda3/envs
                          /public/home/gqwang/.conda/envs
               platform : linux-64
             user-agent : conda/4.12.0 requests/2.23.0 CPython/3.7.7 Linux/3.10.0-862.el7.x86_64 centos/7.5.1804 glibc/2.17
                UID:GID : 1622:1061
             netrc file : None
           offline mode : False

(base) [gqwang@mn02 ~]$ conda info

     active environment : base
    active env location : /public/home/gqwang/miniconda3
            shell level : 1
       user config file : /public/home/gqwang/.condarc
 populated config files : /public/home/gqwang/.condarc
          conda version : 4.12.0
    conda-build version : not installed
         python version : 3.7.7.final.0
       virtual packages : __linux=3.10.0=0
                          __glibc=2.17=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /public/home/gqwang/miniconda3  (writable)
      conda av data dir : /public/home/gqwang/miniconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/linux-64
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/noarch
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/noarch
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /public/home/gqwang/miniconda3/pkgs
                          /public/home/gqwang/.conda/pkgs
       envs directories : /public/home/gqwang/miniconda3/envs
                          /public/home/gqwang/.conda/envs
               platform : linux-64
             user-agent : conda/4.12.0 requests/2.23.0 CPython/3.7.7 Linux/3.10.0-862.el7.x86_64 centos/7.5.1804 glibc/2.17
                UID:GID : 1622:1061
             netrc file : None
           offline mode : False

(base) [gqwang@mn02 ~]$ conda info

     active environment : base
    active env location : /public/home/gqwang/miniconda3
            shell level : 1
       user config file : /public/home/gqwang/.condarc
 populated config files : /public/home/gqwang/.condarc
          conda version : 4.12.0
    conda-build version : not installed
         python version : 3.7.7.final.0
       virtual packages : __linux=3.10.0=0
                          __glibc=2.17=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /public/home/gqwang/miniconda3  (writable)
      conda av data dir : /public/home/gqwang/miniconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/linux-64
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/noarch
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/linux-64
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/noarch
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64
                          https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /public/home/gqwang/miniconda3/pkgs
                          /public/home/gqwang/.conda/pkgs
       envs directories : /public/home/gqwang/miniconda3/envs
                          /public/home/gqwang/.conda/envs
               platform : linux-64
             user-agent : conda/4.12.0 requests/2.23.0 CPython/3.7.7 Linux/3.10.0-862.el7.x86_64 centos/7.5.1804 glibc/2.17
                UID:GID : 1622:1061
             netrc file : None
           offline mode : False

Logs

No response

environment.yml

No response

~/.condarc

channels:
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/linux-64
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/
  - defaults

mamba-org / mamba

memba install errors #3244

Troubleshooting docs

Anaconda default channels

How did you install Mamba?

Search tried in issue tracker

Latest version of Mamba

Tried in Conda?

Describe your issue

>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

mamba info / micromamba info

Logs

environment.yml

~/.condarc