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The Fast Cross-Platform Package Manager
https://mamba.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Cannot install package by URL #3304

Open hvenev-insait opened 4 months ago

hvenev-insait commented 4 months ago

Troubleshooting docs

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Package cache error.

Latest version of Mamba

Tried in Conda?

I didn't try

Describe your issue

I am using mamba 2.x, commit 9300a6530cac4f5575e7f8aa4049fbb9c1150909.

Installing a package via URL or via a conda environment lockfile fails:

$ micromamba create --yes --no-rc --no-env --name=testenv --override-channels 'https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-main.conda'
...
  Package          Version  Build  Channel         Size
─────────────────────────────────────────────────────────
  Install:
─────────────────────────────────────────────────────────

  + _libgcc_mutex      0.1  main   conda-forge         

  Summary:

  Install: 1 packages

  Total download: 0 B

─────────────────────────────────────────────────────────

Transaction starting
[+] 0.0s
Downloading      ━━━━━━━╸━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━   0.0 B /   0.0 B                            0.0s
Linking _libgcc_mutex-0.1-main
error    libmamba Cannot find a valid extracted directory cache for '_libgcc_mutex-0.1-main.conda'
critical libmamba Package cache error.

It appears that linking starts before downloading/extracting has finished.

The issue does not occur if the package is installed by name (micromamba create --yes --no-rc --no-env --name=testenv --override-channels 'conda-forge::_libgcc_mutex=0.1=main').

mamba info / micromamba info

libmamba version : 2.0.0
          mamba version : 2.0.0
           curl version : libcurl/8.6.0 OpenSSL/3.2.1 zlib/1.3.0.zlib-ng brotli/1.1.0 libidn2/2.3.7 libpsl/0.21.5 libssh/0.10.6/openssl/zlib nghttp2/1.59.0 OpenLDAP/2.6.7
     libarchive version : libarchive 3.7.2 zlib/1.3.0.zlib-ng liblzma/5.4.6 bz2lib/1.0.8 liblz4/1.9.4 libzstd/1.5.6
       envs directories : /home/hristo/.local/share/mamba/envs
          package cache : /home/hristo/.local/share/mamba/pkgs
                          /home/hristo/.mamba/pkgs
            environment : None (not found)
           env location : -
      user config files : /home/hristo/.mambarc
 populated config files : 
       virtual packages : __unix=0=0
                          __linux=6.8.6=0
                          __glibc=2.39=0
                          __archspec=1=x86_64-v4
               channels : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
       base environment : /home/hristo/.local/share/mamba
               platform : linux-64

Logs

debug    libmamba Loading configuration
trace    libmamba Compute configurable 'create_base'
trace    libmamba Compute configurable 'no_env'
trace    libmamba Compute configurable 'no_rc'
trace    libmamba Compute configurable 'rc_files'
trace    libmamba Compute configurable 'root_prefix'
warning  libmamba You have not set the root prefix environment variable.
    To permanently modify the root prefix location, either:
      - set the 'MAMBA_ROOT_PREFIX' environment variable
      - use the '-r,--root-prefix' CLI option
      - use 'mamba shell init ...' to initialize your shell
        (then restart or source the contents of the shell init script)
    Continuing with default value: "/home/hristo/.local/share/mamba"
trace    libmamba Compute configurable 'envs_dirs'
trace    libmamba Compute configurable 'file_specs'
trace    libmamba Compute configurable 'spec_file_env_name'
trace    libmamba Compute configurable 'env_name'
trace    libmamba Compute configurable 'use_target_prefix_fallback'
trace    libmamba Compute configurable 'target_prefix'
trace    libmamba Compute configurable 'relocate_prefix'
trace    libmamba Compute configurable 'target_prefix_checks'
trace    libmamba Compute configurable 'pkgs_dirs'
trace    libmamba Compute configurable 'platform'
trace    libmamba Compute configurable 'specs'
trace    libmamba Compute configurable 'others_pkg_mgrs_specs'
trace    libmamba Compute configurable 'experimental'
trace    libmamba Compute configurable 'experimental_repodata_parsing'
trace    libmamba Compute configurable 'debug'
trace    libmamba Compute configurable 'override_channels_enabled'
trace    libmamba Compute configurable 'override_channels'
trace    libmamba Compute configurable 'channels'
trace    libmamba Compute configurable 'channel_alias'
trace    libmamba Compute configurable 'default_channels'
trace    libmamba Compute configurable 'custom_channels'
trace    libmamba Compute configurable 'custom_multichannels'
trace    libmamba Compute configurable 'mirrored_channels'
trace    libmamba Compute configurable 'repodata_use_zst'
trace    libmamba Compute configurable 'repodata_has_zst'
trace    libmamba Compute configurable 'cacert_path'
trace    libmamba Compute configurable 'local_repodata_ttl'
trace    libmamba Compute configurable 'offline'
trace    libmamba Compute configurable 'ssl_no_revoke'
trace    libmamba Compute configurable 'ssl_verify'
trace    libmamba Compute configurable 'proxy_servers'
trace    libmamba Compute configurable 'remote_connect_timeout_secs'
trace    libmamba Compute configurable 'remote_backoff_factor'
trace    libmamba Compute configurable 'remote_max_retries'
trace    libmamba Compute configurable 'no_channel_priority'
trace    libmamba Compute configurable 'strict_channel_priority'
trace    libmamba Compute configurable 'channel_priority'
trace    libmamba Compute configurable 'explicit_install'
trace    libmamba Compute configurable 'no_pin'
trace    libmamba Compute configurable 'no_py_pin'
trace    libmamba Compute configurable 'add_pip_as_python_dependency'
trace    libmamba Compute configurable 'pinned_packages'
trace    libmamba Compute configurable 'freeze_installed'
trace    libmamba Compute configurable 'no_deps'
trace    libmamba Compute configurable 'only_deps'
trace    libmamba Compute configurable 'force_reinstall'
trace    libmamba Compute configurable 'allow_uninstall'
trace    libmamba Compute configurable 'allow_downgrade'
trace    libmamba Compute configurable 'order_solver_request'
trace    libmamba Compute configurable 'categories'
trace    libmamba Compute configurable 'retry_clean_cache'
trace    libmamba Compute configurable 'download_threads'
trace    libmamba Compute configurable 'extract_threads'
trace    libmamba Compute configurable 'allow_softlinks'
trace    libmamba Compute configurable 'always_copy'
trace    libmamba Compute configurable 'always_softlink'
trace    libmamba Compute configurable 'shortcuts'
trace    libmamba Compute configurable 'safety_checks'
trace    libmamba Compute configurable 'extra_safety_checks'
trace    libmamba Compute configurable 'verify_artifacts'
trace    libmamba Compute configurable 'trusted_channels'
trace    libmamba Compute configurable 'lock_timeout'
trace    libmamba Compute configurable 'use_lockfiles'
trace    libmamba Compute configurable 'compile_pyc'
trace    libmamba Compute configurable 'always_yes'
trace    libmamba Compute configurable 'auto_activate_base'
trace    libmamba Compute configurable 'dry_run'
trace    libmamba Compute configurable 'download_only'
trace    libmamba Compute configurable 'print_config_only'
trace    libmamba Compute configurable 'print_context_only'
trace    libmamba Compute configurable 'json'
trace    libmamba Compute configurable 'verbose'
trace    libmamba Compute configurable 'log_level'
trace    libmamba Compute configurable 'log_backtrace'
trace    libmamba Compute configurable 'log_pattern'
trace    libmamba Compute configurable 'changeps1'
trace    libmamba Compute configurable 'shell_completion'
trace    libmamba Compute configurable 'env_prompt'
trace    libmamba Compute configurable 'show_all_configs'
trace    libmamba Compute configurable 'show_all_rc_configs'
trace    libmamba Compute configurable 'show_config_descriptions'
trace    libmamba Compute configurable 'show_config_groups'
trace    libmamba Compute configurable 'show_config_long_descriptions'
trace    libmamba Compute configurable 'show_config_sources'
trace    libmamba Compute configurable 'show_config_values'
trace    libmamba Compute configurable 'quiet'
trace    libmamba Compute configurable 'override_rc_files'
trace    libmamba Compute configurable 'shell_type'
trace    libmamba Compute configurable 'prefix_or_name'
trace    libmamba Compute configurable 'shell_stack'
trace    libmamba Compute configurable 'list_regex'
trace    libmamba Compute configurable 'clean_all'
trace    libmamba Compute configurable 'clean_index_cache'
trace    libmamba Compute configurable 'clean_packages'
trace    libmamba Compute configurable 'clean_tarballs'
trace    libmamba Compute configurable 'clean_locks'
trace    libmamba Compute configurable 'clean_trash'
trace    libmamba Compute configurable 'clean_force_pkgs_dirs'
trace    libmamba Compute configurable 'config_set_system_path'
trace    libmamba Compute configurable 'config_set_env_path'
trace    libmamba Compute configurable 'config_set_file_path'
trace    libmamba Compute configurable 'config_set_sequence_spec'
trace    libmamba Compute configurable 'remove_key'
trace    libmamba Compute configurable 'remove'
trace    libmamba Compute configurable 'set_value'
trace    libmamba Compute configurable 'get_value'
trace    libmamba Compute configurable 'constructor_prefix'
trace    libmamba Compute configurable 'constructor_extract_conda_pkgs'
trace    libmamba Compute configurable 'constructor_extract_tarball'
debug    libmamba 114 configurables computed
debug    libmamba Loading virtual packages
debug    libmamba Loading distribution virtual packages
debug    libmamba Loading CUDA virtual package
debug    libmamba Could not find CUDA version by calling 'nvidia-smi' (skipped)

debug    libsolv  number of solvables: 7, memory used: 0 K
debug    libsolv  number of ids: 218 + 6
debug    libsolv  string memory used: 0 K array + 3 K data,  rel memory used: 0 K array
debug    libsolv  string hash memory: 32 K, rel hash memory : 16 K
debug    libsolv  provide ids: 5
debug    libsolv  provide space needed: 14 + 256
debug    libsolv  shrunk whatprovidesdata from 14 to 14
debug    libsolv  shrunk whatprovidesauxdata from 14 to 6
debug    libsolv  whatprovides memory used: 4 K id array, 1 K data
debug    libsolv  whatprovidesaux memory used: 0 K id array, 0 K data
debug    libsolv  createwhatprovides took 0 ms
debug    libsolv  solver started
debug    libsolv  dosplitprovides=0, noupdateprovide=0, noinfarchcheck=0
debug    libsolv  allowuninstall=1, allowdowngrade=1, allownamechange=1, allowarchchange=0, allowvendorchange=0
debug    libsolv  dupallowdowngrade=1, dupallownamechange=1, dupallowarchchange=1, dupallowvendorchange=1
debug    libsolv  promoteepoch=0, forbidselfconflicts=0
debug    libsolv  obsoleteusesprovides=0, implicitobsoleteusesprovides=0, obsoleteusescolors=0, implicitobsoleteusescolors=1
debug    libsolv  dontinstallrecommended=0, addalreadyrecommended=0 onlynamespacerecommended=0
debug    libsolv  obsoletes data: 1 entries
debug    libsolv  added 0 pkg rules for installed solvables
debug    libsolv  added 0 pkg rules for updaters of installed solvables
debug    libsolv  added 0 pkg rules for packages involved in a job
debug    libsolv  added 0 pkg rules because of weak dependencies
debug    libsolv  6 of 6 installable solvables considered for solving
debug    libsolv  pkg rule memory used: 0 K
debug    libsolv  pkg rule creation took 1 ms
debug    libsolv    Add rule: debug    libsolv  Rule #1:debug    libsolv  
debug    libsolv      __unix-0-0 [3]debug    libsolv  Idebug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv    Add rule: debug    libsolv  Rule #2:debug    libsolv  
debug    libsolv      __linux-6.8.6-0 [4]debug    libsolv  Idebug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv    Add rule: debug    libsolv  Rule #3:debug    libsolv  
debug    libsolv      __glibc-2.39-0 [5]debug    libsolv  Idebug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv    Add rule: debug    libsolv  Rule #4:debug    libsolv  
debug    libsolv      __archspec-1-x86_64-v4 [6]debug    libsolv  Idebug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv    Add rule: debug    libsolv  Rule #5:debug    libsolv  
debug    libsolv      __unix-0-0 [3]debug    libsolv  Idebug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv    Add rule: debug    libsolv  Rule #6:debug    libsolv  
debug    libsolv      __linux-6.8.6-0 [4]debug    libsolv  Idebug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv    Add rule: debug    libsolv  Rule #7:debug    libsolv  
debug    libsolv      __glibc-2.39-0 [5]debug    libsolv  Idebug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv    Add rule: debug    libsolv  Rule #8:debug    libsolv  
debug    libsolv      __archspec-1-x86_64-v4 [6]debug    libsolv  Idebug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv  job: install unknown job select
debug    libsolv    Add rule: debug    libsolv  Rule #9:debug    libsolv  
debug    libsolv      _libgcc_mutex-0.1-main [2]debug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv    - job debug    libsolv  Rule #9:debug    libsolv  
debug    libsolv      _libgcc_mutex-0.1-main [2]debug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv  0 pkg rules, 2 * 4 update rules, 1 job rules, 0 infarch rules, 0 dup rules, 0 choice rules, 0 best rules, 0 yumobs rules
debug    libsolv  0 black rules, 0 recommends rules, 0 repo priority rules
debug    libsolv  overall rule memory used: 0 K
debug    libsolv  number of rules: 10
debug    libsolv  FEATURE debug    libsolv  Rule #1:debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv  FEATURE debug    libsolv  Rule #2:debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv  FEATURE debug    libsolv  Rule #3:debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv  FEATURE debug    libsolv  Rule #4:debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv  UPDATE debug    libsolv  Rule #5:debug    libsolv  
debug    libsolv      __unix-0-0 [3]debug    libsolv  Idebug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv  UPDATE debug    libsolv  Rule #6:debug    libsolv  
debug    libsolv      __linux-6.8.6-0 [4]debug    libsolv  Idebug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv  UPDATE debug    libsolv  Rule #7:debug    libsolv  
debug    libsolv      __glibc-2.39-0 [5]debug    libsolv  Idebug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv  UPDATE debug    libsolv  Rule #8:debug    libsolv  
debug    libsolv      __archspec-1-x86_64-v4 [6]debug    libsolv  Idebug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv  JOB debug    libsolv  Rule #9:debug    libsolv  
debug    libsolv      _libgcc_mutex-0.1-main [2]debug    libsolv   (w1)debug    libsolv  
debug    libsolv      next rules: 0 0
debug    libsolv  solving...
debug    libsolv  installing  __unix-0-0 (assertion)
debug    libsolv  installing  __linux-6.8.6-0 (assertion)
debug    libsolv  installing  __glibc-2.39-0 (assertion)
debug    libsolv  installing  __archspec-1-x86_64-v4 (assertion)
debug    libsolv  installing  _libgcc_mutex-0.1-main (assertion)
debug    libsolv  initial propagate (propagate_index: 0;  size decisionq: 6)...
debug    libsolv  ----- propagate level 1 -----
debug    libsolv  propagate decision 1:debug    libsolv      system:system.any [1]debug    libsolv   Install.level1debug    libsolv  
debug    libsolv  propagate decision 3:debug    libsolv      __unix-0-0 [3]debug    libsolv  Idebug    libsolv   Install.level1debug    libsolv  
debug    libsolv  propagate decision 4:debug    libsolv      __linux-6.8.6-0 [4]debug    libsolv  Idebug    libsolv   Install.level1debug    libsolv  
debug    libsolv  propagate decision 5:debug    libsolv      __glibc-2.39-0 [5]debug    libsolv  Idebug    libsolv   Install.level1debug    libsolv  
debug    libsolv  propagate decision 6:debug    libsolv      __archspec-1-x86_64-v4 [6]debug    libsolv  Idebug    libsolv   Install.level1debug    libsolv  
debug    libsolv  propagate decision 2:debug    libsolv      _libgcc_mutex-0.1-main [2]debug    libsolv   Install.level1debug    libsolv  
debug    libsolv  ----- propagate end -----
debug    libsolv  resolving job rules
debug    libsolv  resolving installed packages
debug    libsolv  deciding unresolved rules
debug    libsolv  installing recommended packages
debug    libsolv  deciding orphaned packages
debug    libsolv  solver statistics: 0 learned rules, 0 unsolvable, 0 minimization steps
debug    libsolv  done solving.

debug    libsolv  solver took 1 ms
debug    libsolv  final solver statistics: 0 problems, 0 learned rules, 0 unsolvable
debug    libsolv  solver_solve took 2 ms
debug    libsolv  ordering transaction
debug    libsolv  transaction elements: 1
debug    libsolv  edges: 0, edge space: 0
debug    libsolv  edge creation took 0 ms
debug    libsolv  cycles broken: 0
debug    libsolv  cycle breaking took 0 ms
debug    libsolv  invedge space: 3
debug    libsolv  creating new transaction took 0 ms
debug    libsolv  transaction ordering took 0 ms
debug    libmamba Solution: Install _libgcc_mutex-0.1-main
error    libmamba Could not lock non-existing path '/home/hristo/.local/share/mamba/pkgs'
error    libmamba Could not lock non-existing path '/home/hristo/.mamba/pkgs'
info     libmamba No python version given to TransactionContext, leaving it empty

Transaction

  Prefix: /home/hristo/.local/share/mamba/envs/testenv

  Updating specs:

   - https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-main.conda

  Package          Version  Build  Channel         Size
─────────────────────────────────────────────────────────
  Install:
─────────────────────────────────────────────────────────

  + _libgcc_mutex      0.1  main   conda-forge         

  Summary:

  Install: 1 packages

  Total download: 0 B

─────────────────────────────────────────────────────────

debug    libmamba Locking directory '/home/hristo/.local/share/mamba/envs/testenv/conda-meta'
trace    libmamba Lockfile created at '/home/hristo/.local/share/mamba/envs/testenv/conda-meta/conda-meta.lock'
debug    libmamba Successfully locked
info     libmamba Cleaned 0 .mamba_trash files. 0 remaining.

Transaction starting
debug    libmamba Verify cache '/home/hristo/.local/share/mamba/pkgs' for package extracted directory '_libgcc_mutex-0.1-main'
debug    libmamba Extracted package cache '/home/hristo/.local/share/mamba/pkgs/_libgcc_mutex-0.1-main' not found
debug    libmamba '_libgcc_mutex-0.1-main' extracted directory cache is invalid
debug    libmamba Verify cache '/home/hristo/.mamba/pkgs' for package extracted directory '_libgcc_mutex-0.1-main'
debug    libmamba Extracted package cache '/home/hristo/.mamba/pkgs/_libgcc_mutex-0.1-main' not found
debug    libmamba '_libgcc_mutex-0.1-main' extracted directory cache is invalid
debug    libmamba Verify cache '/home/hristo/.local/share/mamba/pkgs' for package tarball '_libgcc_mutex-0.1-main'
debug    libmamba '_libgcc_mutex-0.1-main' tarball cache is invalid
debug    libmamba Verify cache '/home/hristo/.mamba/pkgs' for package tarball '_libgcc_mutex-0.1-main'
debug    libmamba '_libgcc_mutex-0.1-main' tarball cache is invalid
debug    libmamba Checking if '/home/hristo/.local/share/mamba/pkgs' is writable
trace    libmamba Cache path does not exists or is not writable
debug    libmamba '/home/hristo/.local/share/mamba/pkgs' writable
debug    libmamba Adding '_libgcc_mutex' to download targets from 'conda-forge/linux-64/_libgcc_mutex-0.1-main.conda'
[+] 0.0s
Downloading      ━━━━━━━╸━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━   0.0 B /   0.0 B                            0.0s
Linking _libgcc_mutex-0.1-main
debug    libmamba Verify cache '/home/hristo/.local/share/mamba/pkgs' for package extracted directory '_libgcc_mutex-0.1-main'
debug    libmamba Extracted package cache '/home/hristo/.local/share/mamba/pkgs/_libgcc_mutex-0.1-main' not found
debug    libmamba '_libgcc_mutex-0.1-main' extracted directory cache is invalid
debug    libmamba Verify cache '/home/hristo/.mamba/pkgs' for package extracted directory '_libgcc_mutex-0.1-main'
debug    libmamba Extracted package cache '/home/hristo/.mamba/pkgs/_libgcc_mutex-0.1-main' not found
debug    libmamba '_libgcc_mutex-0.1-main' extracted directory cache is invalid
error    libmamba Cannot find a valid extracted directory cache for '_libgcc_mutex-0.1-main.conda'
debug    libmamba Unlocking '/home/hristo/.local/share/mamba/envs/testenv/conda-meta'
trace    libmamba Removing file '/home/hristo/.local/share/mamba/envs/testenv/conda-meta/conda-meta.lock'
critical libmamba Package cache error.

environment.yml

No response

~/.condarc

No response

opoplawski commented 2 months ago

Not sure if it's the same issue - but micromamba also doesn't seem to support the package[channel=URL] or URL::package syntax either.