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Unable to install Micromamba v2.0.0 and above using Miniconda #3530

Closed NilaBlueshirt closed 1 month ago

NilaBlueshirt commented 1 month ago

Troubleshooting docs

Anaconda default channels

How did you install Mamba?

Micromamba

Search tried in issue tracker

libmamba

Latest version of Mamba

Tried in Conda?

Not applicable

Describe your issue

Dear Mamba Developers,

Thanks a ton for all of your work! And I apologize if this is something that already been asked/fixed.

I'm trying to install Mamba v2.0.0 and above using Miniconda, to a linux x86_64 cluster. The method I have been using worked great in the past, including mamba v1.5.10, and here is how:

1. Install Miniconda

by running a freshly downloaded Miniconda3-latest-Linux-x86_64.sh

2. Install Mamba

conda install -yc conda-forge mamba=2.0.0

3. Install Micromamba

packages=( numpy scipy pandas natsort scikit-learn networkx beautifulsoup4 opencv geopandas sympy mpmath matplotlib plotly bokeh seaborn ipython tqdm zstandard pyarrow feather-format pyyaml yaml openpyxl xlrd dask micromamba openssh rsync ) mamba install -yc conda-forge "${packages[@]}" mamba clean --all -y

And here are the error messages after step 1:

Retrieving notices: ...working... done Channels:

LibMambaUnsatisfiableError: Encountered problems while solving:

Could not solve for environment specs The following packages are incompatible ├─ conda-libmamba-solver is installable with the potential options │ ├─ conda-libmamba-solver [24.1.0|24.7.0|24.9.0] would require │ │ └─ libmambapy [>=1.5.6,<2.0.0a0 |>=1.5.6,<2.0a0 ] with the potential options │ │ ├─ libmambapy 1.5.8 would require │ │ │ └─ libmamba 1.5.8 hfe524e5_2, which can be installed; │ │ ├─ libmambapy [0.22.0|0.22.1|...|1.5.9] would require │ │ │ └─ python >=3.10,<3.11.0a0 , which can be installed; │ │ ├─ libmambapy [1.4.1|1.4.2|...|1.5.9] would require │ │ │ └─ python >=3.11,<3.12.0a0 , which can be installed; │ │ ├─ libmambapy 1.5.10 would require │ │ │ └─ libmamba 1.5.10 h4cc3d14_0, which can be installed; │ │ ├─ libmambapy 1.5.10 would require │ │ │ └─ libmamba 1.5.10 hf72d635_1, which can be installed; │ │ ├─ libmambapy [0.22.0|0.22.1|...|1.5.9] would require │ │ │ └─ python >=3.9,<3.10.0a0 , which can be installed; │ │ ├─ libmambapy 1.5.6 would require │ │ │ └─ libmamba 1.5.6 had39da4_0, which can be installed; │ │ ├─ libmambapy [0.22.0|0.22.1|...|1.5.8] would require │ │ │ └─ python >=3.8,<3.9.0a0 , which can be installed; │ │ ├─ libmambapy 1.5.7 would require │ │ │ └─ libmamba 1.5.7 had39da4_0, which can be installed; │ │ ├─ libmambapy 1.5.8 would require │ │ │ └─ libmamba 1.5.8 had39da4_0, which can be installed; │ │ ├─ libmambapy 1.5.9 would require │ │ │ └─ libmamba 1.5.9 h4cc3d14_0, which can be installed; │ │ ├─ libmambapy 1.5.6 would require │ │ │ └─ libmamba 1.5.6 hfe524e5_0, which does not exist (perhaps a missing channel); │ │ ├─ libmambapy 1.5.8 would require │ │ │ └─ libmamba 1.5.8 hfe524e5_0, which can be installed; │ │ ├─ libmambapy 1.5.8 would require │ │ │ └─ libmamba 1.5.8 hfe524e5_1, which can be installed; │ │ ├─ libmambapy 1.5.8 would require │ │ │ └─ libmamba 1.5.8 hfe524e5_3, which can be installed; │ │ └─ libmambapy 1.5.8 would require │ │ └─ python >=3.13,<3.14.0a0 , which can be installed; │ ├─ conda-libmamba-solver [22.3.0|22.3.1] would require │ │ └─ libmambapy 0.22.* with the potential options │ │ ├─ libmambapy [0.22.0|0.22.1|...|1.5.9], which can be installed (as previously explained); │ │ ├─ libmambapy [0.22.0|0.22.1|...|1.5.9], which can be installed (as previously explained); │ │ ├─ libmambapy [0.22.0|0.22.1|...|1.5.8], which can be installed (as previously explained); │ │ └─ libmambapy [0.22.0|0.22.1] would require │ │ └─ python >=3.7,<3.8.0a0 , which can be installed; │ ├─ conda-libmamba-solver [22.12.0|22.6.0|22.8.1|23.1.0] would require │ │ └─ conda [>=22.11.0,<23.1.0a |>=22.11.0,<23.2.0a |>=4.13,<22.11.0a ] with the potential options │ │ ├─ conda [22.11.0|22.11.1|...|4.14.0] would require │ │ │ └─ python >=3.10,<3.11.0a0 , which can be installed; │ │ ├─ conda [22.11.1|22.9.0|23.1.0] would require │ │ │ └─ python >=3.11,<3.12.0a0 , which can be installed; │ │ ├─ conda [22.11.0|22.11.1|...|4.14.0] would require │ │ │ └─ python >=3.7,<3.8.0a0 , which can be installed; │ │ ├─ conda [22.11.0|22.11.1|...|4.14.0] would require │ │ │ └─ python >=3.8,<3.9.0a0 , which can be installed; │ │ └─ conda [22.11.0|22.11.1|...|4.14.0] would require │ │ └─ python >=3.9,<3.10.0a0 , which can be installed; │ ├─ conda-libmamba-solver [23.11.0|23.11.1|23.12.0] would require │ │ └─ libmambapy >=1.5.3,<2.0.0a0 with the potential options │ │ ├─ libmambapy 1.5.8, which can be installed (as previously explained); │ │ ├─ libmambapy [0.22.0|0.22.1|...|1.5.9], which can be installed (as previously explained); │ │ ├─ libmambapy [1.4.1|1.4.2|...|1.5.9], which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.10, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.10, which can be installed (as previously explained); │ │ ├─ libmambapy [0.22.0|0.22.1|...|1.5.9], which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.6, which can be installed (as previously explained); │ │ ├─ libmambapy [0.22.0|0.22.1|...|1.5.8], which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.7, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.8, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.9, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.6, which cannot be installed (as previously explained); │ │ ├─ libmambapy 1.5.8, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.8, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.8, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.8, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.3 would require │ │ │ └─ libmamba 1.5.3 had39da4_1, which can be installed; │ │ ├─ libmambapy 1.5.3 would require │ │ │ └─ libmamba 1.5.3 had39da4_2, which can be installed; │ │ ├─ libmambapy 1.5.4 would require │ │ │ └─ libmamba 1.5.4 had39da4_0, which can be installed; │ │ ├─ libmambapy 1.5.5 would require │ │ │ └─ libmamba 1.5.5 had39da4_0, which can be installed; │ │ └─ libmambapy 1.5.3 would require │ │ └─ libmamba 1.5.3 haf1ee3a_0, which can be installed; │ ├─ conda-libmamba-solver [23.3.0|23.5.0|...|23.9.3] would require │ │ └─ libmambapy [>=1.4.1,<2.0.0a0 |>=1.5.1,<2.0.0a0 ] with the potential options │ │ ├─ libmambapy 1.5.8, which can be installed (as previously explained); │ │ ├─ libmambapy [0.22.0|0.22.1|...|1.5.9], which can be installed (as previously explained); │ │ ├─ libmambapy [1.4.1|1.4.2|...|1.5.9], which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.10, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.10, which can be installed (as previously explained); │ │ ├─ libmambapy [0.22.0|0.22.1|...|1.5.9], which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.6, which can be installed (as previously explained); │ │ ├─ libmambapy [0.22.0|0.22.1|...|1.5.8], which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.7, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.8, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.9, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.6, which cannot be installed (as previously explained); │ │ ├─ libmambapy 1.5.8, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.8, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.8, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.8, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.3, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.3, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.4, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.5, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.3, which can be installed (as previously explained); │ │ ├─ libmambapy 1.5.2 would require │ │ │ └─ libmamba 1.5.2 had39da4_1, which can be installed; │ │ └─ libmambapy 1.5.1 would require │ │ └─ libmamba 1.5.1 haf1ee3a_0, which can be installed; │ ├─ conda-libmamba-solver [22.12.0|22.8.1|...|23.9.3] would require │ │ └─ python >=3.10,<3.11.0a0 , which can be installed; │ ├─ conda-libmamba-solver [22.12.0|22.8.1|23.1.0] would require │ │ └─ python >=3.7,<3.8.0a0 , which can be installed; │ ├─ conda-libmamba-solver [22.12.0|22.8.1|...|23.9.3] would require │ │ └─ python >=3.8,<3.9.0a0 , which can be installed; │ ├─ conda-libmamba-solver [22.12.0|22.8.1|...|23.9.3] would require │ │ └─ python >=3.9,<3.10.0a0 , which can be installed; │ └─ conda-libmamba-solver [23.1.0|23.11.0|...|23.9.3] would require │ └─ python >=3.11,<3.12.0a0 , which can be installed; ├─ mamba 2.0.2* is not installable because it requires │ └─ libmamba 2.0.2 hf72d635_0, which conflicts with any installable versions previously reported; └─ pin-1 is not installable because it requires └─ python 3.12. , which conflicts with any installable versions previously reported.

build-2024-10-13.sh: line 65: mamba: command not found build-2024-10-13.sh: line 66: mamba: command not found build-2024-10-13.sh: line 68: /packages/apps/mamba/2.0.2/bin/activate

mamba info / micromamba info

Since the install failed, system won't recognize "mamba".

Logs

Since the install failed, system won't recognize "mamba".

environment.yml

N/A

~/.condarc

channel_priority: flexible
channels:
  - defaults
## DO NOT DO THIS GUYS SPECIFY THE CHANNEL AT RUNTIME ...
# - https://conda.anaconda.org/gurobi
# - http://conda.anaconda.org/gurobi

(I don't actually use this .condarc file though.)
jjerphan commented 1 month ago

Hi,

This is a duplicate of https://github.com/mamba-org/mamba/issues/3503 see https://github.com/mamba-org/mamba/issues/3503#issuecomment-2397307533 for a temporary solution using micromamba.