Open matteoacrossi opened 5 months ago
I'm using both Github runners and AWS CodeBuild runners in a repository, configured with the AWS managed Ubuntu image, and the setup-micromamba action with a custom environment file:
and the following settings:
- uses: mamba-org/setup-micromamba@v1 with: micromamba-version: '1.5.8-0' # any version from https://github.com/mamba-org/micromamba-releases environment-file: .devcontainer/environment.yml log-level: debug cache-environment: true post-cleanup: 'all'
The build works on the GitHub runner, but fails in the AWS runner with the following log: log.txt
this looks like a mamba issue and not related to setup-micromamba. can you reproduce it without setup-micromamba as well?
I'm using both Github runners and AWS CodeBuild runners in a repository, configured with the AWS managed Ubuntu image, and the setup-micromamba action with a custom environment file:
environment.yml
``` name: test-env channels: - conda-forge dependencies: - _libgcc_mutex=0.1=conda_forge - _openmp_mutex=4.5=2_gnu - alembic=1.13.1=pyhd8ed1ab_1 - alsa-lib=1.2.11=hd590300_1 - anyio=4.3.0=pyhd8ed1ab_0 - argon2-cffi=23.1.0=pyhd8ed1ab_0 - argon2-cffi-bindings=21.2.0=py312h98912ed_4 - arrow=1.3.0=pyhd8ed1ab_0 - asttokens=2.4.1=pyhd8ed1ab_0 - async-lru=2.0.4=pyhd8ed1ab_0 - attr=2.5.1=h166bdaf_1 - attrs=23.2.0=pyh71513ae_0 - autoray=0.6.12=pyhd8ed1ab_0 - babel=2.14.0=pyhd8ed1ab_0 - beautifulsoup4=4.12.3=pyha770c72_0 - bleach=6.1.0=pyhd8ed1ab_0 - brotli=1.1.0=hd590300_1 - brotli-bin=1.1.0=hd590300_1 - brotli-python=1.1.0=py312h30efb56_1 - bzip2=1.0.8=hd590300_5 - ca-certificates=2024.2.2=hbcca054_0 - cached-property=1.5.2=hd8ed1ab_1 - cached_property=1.5.2=pyha770c72_1 - cairo=1.18.0=h3faef2a_0 - certifi=2024.2.2=pyhd8ed1ab_0 - cffi=1.16.0=py312hf06ca03_0 - charset-normalizer=3.3.2=pyhd8ed1ab_0 - colorama=0.4.6=pyhd8ed1ab_0 - colorlog=6.8.2=py312h7900ff3_0 - comm=0.2.2=pyhd8ed1ab_0 - contourpy=1.2.1=py312h8572e83_0 - cotengra=0.6.2=pyhd8ed1ab_0 - cuda-nvrtc=12.5.40=he02047a_0 - cuda-version=12.5=hd4f0392_3 - cupy=13.1.0=py312h7b0f9d9_4 - cupy-core=13.1.0=py312hffdfcc6_4 - cycler=0.12.1=pyhd8ed1ab_0 - cytoolz=0.12.3=py312h98912ed_0 - dbus=1.13.6=h5008d03_3 - debugpy=1.8.1=py312h30efb56_0 - decorator=5.1.1=pyhd8ed1ab_0 - defusedxml=0.7.1=pyhd8ed1ab_0 - dill=0.3.8=pyhd8ed1ab_0 - entrypoints=0.4=pyhd8ed1ab_0 - exceptiongroup=1.2.0=pyhd8ed1ab_2 - executing=2.0.1=pyhd8ed1ab_0 - expat=2.6.2=h59595ed_0 - fastrlock=0.8.2=py312h30efb56_2 - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 - font-ttf-inconsolata=3.000=h77eed37_0 - font-ttf-source-code-pro=2.038=h77eed37_0 - font-ttf-ubuntu=0.83=h77eed37_2 - fontconfig=2.14.2=h14ed4e7_0 - fonts-conda-ecosystem=1=0 - fonts-conda-forge=1=0 - fonttools=4.52.1=py312h9a8786e_0 - fqdn=1.5.1=pyhd8ed1ab_0 - freetype=2.12.1=h267a509_2 - gettext=0.22.5=h59595ed_2 - gettext-tools=0.22.5=h59595ed_2 - gf2x=1.3.0=ha476b99_2 - glib=2.80.2=hf974151_0 - glib-tools=2.80.2=hb6ce0ca_0 - gmp=6.3.0=h59595ed_1 - gmpy2=2.1.5=py312h1d5cde6_1 - graphite2=1.3.13=h59595ed_1003 - greenlet=3.0.3=py312h30efb56_0 - gst-plugins-base=1.24.3=h9ad1361_0 - gstreamer=1.24.3=haf2f30d_0 - h11=0.14.0=pyhd8ed1ab_0 - h2=4.1.0=pyhd8ed1ab_0 - harfbuzz=8.5.0=hfac3d4d_0 - hpack=4.0.0=pyh9f0ad1d_0 - httpcore=1.0.5=pyhd8ed1ab_0 - httpx=0.27.0=pyhd8ed1ab_0 - hyperframe=6.0.1=pyhd8ed1ab_0 - icu=73.2=h59595ed_0 - idna=3.7=pyhd8ed1ab_0 - importlib-metadata=7.1.0=pyha770c72_0 - importlib_metadata=7.1.0=hd8ed1ab_0 - importlib_resources=6.4.0=pyhd8ed1ab_0 - iniconfig=2.0.0=pyhd8ed1ab_0 - ipykernel=6.29.3=pyhd33586a_0 - ipython=8.24.0=pyh707e725_0 - ipywidgets=8.1.2=pyhd8ed1ab_1 - isoduration=20.11.0=pyhd8ed1ab_0 - jedi=0.19.1=pyhd8ed1ab_0 - jinja2=3.1.4=pyhd8ed1ab_0 - json5=0.9.25=pyhd8ed1ab_0 - jsonpointer=2.4=py312h7900ff3_3 - jsonschema=4.22.0=pyhd8ed1ab_0 - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0 - jsonschema-with-format-nongpl=4.22.0=pyhd8ed1ab_0 - jupyter=1.0.0=pyhd8ed1ab_10 - jupyter-lsp=2.2.5=pyhd8ed1ab_0 - jupyter_client=8.6.2=pyhd8ed1ab_0 - jupyter_console=6.6.3=pyhd8ed1ab_0 - jupyter_core=5.7.2=py312h7900ff3_0 - jupyter_events=0.10.0=pyhd8ed1ab_0 - jupyter_server=2.14.0=pyhd8ed1ab_0 - jupyter_server_terminals=0.5.3=pyhd8ed1ab_0 - jupyterlab=4.2.1=pyhd8ed1ab_0 - jupyterlab_pygments=0.3.0=pyhd8ed1ab_1 - jupyterlab_server=2.27.2=pyhd8ed1ab_0 - jupyterlab_widgets=3.0.10=pyhd8ed1ab_0 - keyutils=1.6.1=h166bdaf_0 - kiwisolver=1.4.5=py312h8572e83_1 - krb5=1.21.2=h659d440_0 - lame=3.100=h166bdaf_1003 - lcms2=2.16=hb7c19ff_0 - ld_impl_linux-64=2.40=hf3520f5_1 - lerc=4.0.0=h27087fc_0 - libasprintf=0.22.5=h661eb56_2 - libasprintf-devel=0.22.5=h661eb56_2 - libblas=3.9.0=22_linux64_openblas - libbrotlicommon=1.1.0=hd590300_1 - libbrotlidec=1.1.0=hd590300_1 - libbrotlienc=1.1.0=hd590300_1 - libcap=2.69=h0f662aa_0 - libcblas=3.9.0=22_linux64_openblas - libclang-cpp15=15.0.7=default_h127d8a8_5 - libclang13=18.1.6=default_h5d6823c_0 - libcublas=12.5.2.13=he02047a_0 - libcufft=11.2.3.18=he02047a_0 - libcups=2.3.3=h4637d8d_4 - libcurand=10.3.6.39=he02047a_0 - libcusolver=11.6.2.40=he02047a_0 - libcusparse=12.4.1.24=he02047a_0 - libdeflate=1.20=hd590300_0 - libedit=3.1.20191231=he28a2e2_2 - libevent=2.1.12=hf998b51_1 - libexpat=2.6.2=h59595ed_0 - libffi=3.4.2=h7f98852_5 - libflac=1.4.3=h59595ed_0 - libflint=2.9.0=h2f819a4_ntl_100 - libgcc-ng=13.2.0=h77fa898_7 - libgcrypt=1.10.3=hd590300_0 - libgettextpo=0.22.5=h59595ed_2 - libgettextpo-devel=0.22.5=h59595ed_2 - libgfortran-ng=13.2.0=h69a702a_7 - libgfortran5=13.2.0=hca663fb_7 - libglib=2.80.2=hf974151_0 - libgomp=13.2.0=h77fa898_7 - libgpg-error=1.49=h4f305b6_0 - libiconv=1.17=hd590300_2 - libjpeg-turbo=3.0.0=hd590300_1 - liblapack=3.9.0=22_linux64_openblas - libllvm14=14.0.6=hcd5def8_4 - libllvm15=15.0.7=hb3ce162_4 - libllvm18=18.1.6=hb77312f_0 - libnsl=2.0.1=hd590300_0 - libnvjitlink=12.5.40=he02047a_0 - libogg=1.3.4=h7f98852_1 - libopenblas=0.3.27=pthreads_h413a1c8_0 - libopus=1.3.1=h7f98852_1 - libpng=1.6.43=h2797004_0 - libpq=16.3=ha72fbe1_0 - libsndfile=1.2.2=hc60ed4a_1 - libsodium=1.0.18=h36c2ea0_1 - libsqlite=3.45.3=h2797004_0 - libstdcxx-ng=13.2.0=hc0a3c3a_7 - libsystemd0=255=h3516f8a_1 - libtiff=4.6.0=h1dd3fc0_3 - libuuid=2.38.1=h0b41bf4_0 - libvorbis=1.3.7=h9c3ff4c_0 - libwebp-base=1.4.0=hd590300_0 - libxcb=1.15=h0b41bf4_0 - libxkbcommon=1.7.0=h662e7e4_0 - libxml2=2.12.7=hc051c1a_0 - libzlib=1.2.13=hd590300_5 - llvmlite=0.42.0=py312hb06c811_1 - lz4-c=1.9.4=hcb278e6_0 - mako=1.3.5=pyhd8ed1ab_0 - markupsafe=2.1.5=py312h98912ed_0 - matplotlib=3.8.4=py312h7900ff3_2 - matplotlib-base=3.8.4=py312h20ab3a6_2 - matplotlib-inline=0.1.7=pyhd8ed1ab_0 - mistune=3.0.2=pyhd8ed1ab_0 - more-itertools=10.2.0=pyhd8ed1ab_0 - mpc=1.3.1=hfe3b2da_0 - mpfr=4.2.1=h9458935_1 - mpg123=1.32.6=h59595ed_0 - mpmath=1.3.0=pyhd8ed1ab_0 - munkres=1.1.4=pyh9f0ad1d_0 - mysql-common=8.3.0=hf1915f5_4 - mysql-libs=8.3.0=hca2cd23_4 - nbclient=0.10.0=pyhd8ed1ab_0 - nbconvert=7.16.4=hd8ed1ab_0 - nbconvert-core=7.16.4=pyhd8ed1ab_0 - nbconvert-pandoc=7.16.4=hd8ed1ab_0 - nbformat=5.10.4=pyhd8ed1ab_0 - ncurses=6.5=h59595ed_0 - nest-asyncio=1.6.0=pyhd8ed1ab_0 - notebook=7.2.0=pyhd8ed1ab_0 - notebook-shim=0.2.4=pyhd8ed1ab_0 - nspr=4.35=h27087fc_0 - nss=3.100=hca3bf56_0 - ntl=11.4.3=hef3c4d3_1 - numba=0.59.1=py312hacefee8_0 - numpy=1.26.4=py312heda63a1_0 - openjpeg=2.5.2=h488ebb8_0 - openssl=3.3.0=h4ab18f5_3 - optuna=3.6.0=pyhd8ed1ab_0 - overrides=7.7.0=pyhd8ed1ab_0 - packaging=24.0=pyhd8ed1ab_0 - pandoc=3.2=ha770c72_0 - pandocfilters=1.5.0=pyhd8ed1ab_0 - parso=0.8.4=pyhd8ed1ab_0 - pbr=6.0.0=pyhd8ed1ab_0 - pcre2=10.43=hcad00b1_0 - pexpect=4.9.0=pyhd8ed1ab_0 - pickleshare=0.7.5=py_1003 - pillow=10.3.0=py312hdcec9eb_0 - pip=24.0=pyhd8ed1ab_0 - pixman=0.43.2=h59595ed_0 - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1 - platformdirs=4.2.2=pyhd8ed1ab_0 - pluggy=1.5.0=pyhd8ed1ab_0 - ply=3.11=pyhd8ed1ab_2 - prometheus_client=0.20.0=pyhd8ed1ab_0 - prompt-toolkit=3.0.42=pyha770c72_0 - prompt_toolkit=3.0.42=hd8ed1ab_0 - psutil=5.9.8=py312h98912ed_0 - pthread-stubs=0.4=h36c2ea0_1001 - ptyprocess=0.7.0=pyhd3deb0d_0 - pulseaudio-client=17.0=hb77b528_0 - pure_eval=0.2.2=pyhd8ed1ab_0 - pycparser=2.22=pyhd8ed1ab_0 - pygments=2.18.0=pyhd8ed1ab_0 - pyparsing=3.1.2=pyhd8ed1ab_0 - pyqt=5.15.9=py312h949fe66_5 - pyqt5-sip=12.12.2=py312h30efb56_5 - pysocks=1.7.1=pyha2e5f31_6 - pytest=8.2.1=pyhd8ed1ab_0 - python=3.12.0=hab00c5b_0_cpython - python-dateutil=2.9.0=pyhd8ed1ab_0 - python-fastjsonschema=2.19.1=pyhd8ed1ab_0 - python-json-logger=2.0.7=pyhd8ed1ab_0 - python-symengine=0.11.0=py312h83f29e1_1 - python_abi=3.12=4_cp312 - pytz=2024.1=pyhd8ed1ab_0 - pyyaml=6.0.1=py312h98912ed_1 - pyzmq=26.0.3=py312h8fd38d8_0 - qiskit=1.1.0=py312h4413252_1 - qt-main=5.15.8=hc9dc06e_21 - qtconsole-base=5.5.2=pyha770c72_0 - qtpy=2.4.1=pyhd8ed1ab_0 - quimb=1.8.1=pyhd8ed1ab_0 - readline=8.2=h8228510_1 - referencing=0.35.1=pyhd8ed1ab_0 - requests=2.32.2=pyhd8ed1ab_0 - rfc3339-validator=0.1.4=pyhd8ed1ab_0 - rfc3986-validator=0.1.1=pyh9f0ad1d_0 - rpds-py=0.18.1=py312h4413252_0 - rustworkx=0.14.2=py312h55e1634_0 - scipy=1.13.1=py312hc2bc53b_0 - send2trash=1.8.3=pyh0d859eb_0 - setuptools=70.0.0=pyhd8ed1ab_0 - sip=6.7.12=py312h30efb56_0 - six=1.16.0=pyh6c4a22f_0 - sniffio=1.3.1=pyhd8ed1ab_0 - soupsieve=2.5=pyhd8ed1ab_1 - sqlalchemy=2.0.30=py312h9a8786e_0 - stack_data=0.6.2=pyhd8ed1ab_0 - stevedore=5.2.0=pyhd8ed1ab_0 - symengine=0.11.2=h38c2413_1 - sympy=1.12=pypyh9d50eac_103 - terminado=0.18.1=pyh0d859eb_0 - tinycss2=1.3.0=pyhd8ed1ab_0 - tk=8.6.13=noxft_h4845f30_101 - toml=0.10.2=pyhd8ed1ab_0 - tomli=2.0.1=pyhd8ed1ab_0 - toolz=0.12.1=pyhd8ed1ab_0 - tornado=6.4=py312h98912ed_0 - tqdm=4.66.4=pyhd8ed1ab_0 - traitlets=5.14.3=pyhd8ed1ab_0 - types-python-dateutil=2.9.0.20240316=pyhd8ed1ab_0 - typing-extensions=4.11.0=hd8ed1ab_0 - typing_extensions=4.11.0=pyha770c72_0 - typing_utils=0.1.0=pyhd8ed1ab_0 - tzdata=2024a=h0c530f3_0 - uri-template=1.3.0=pyhd8ed1ab_0 - urllib3=2.2.1=pyhd8ed1ab_0 - wcwidth=0.2.13=pyhd8ed1ab_0 - webcolors=1.13=pyhd8ed1ab_0 - webencodings=0.5.1=pyhd8ed1ab_2 - websocket-client=1.8.0=pyhd8ed1ab_0 - wheel=0.43.0=pyhd8ed1ab_1 - widgetsnbextension=4.0.10=pyhd8ed1ab_0 - xcb-util=0.4.0=hd590300_1 - xcb-util-image=0.4.0=h8ee46fc_1 - xcb-util-keysyms=0.4.0=h8ee46fc_1 - xcb-util-renderutil=0.3.9=hd590300_1 - xcb-util-wm=0.4.1=h8ee46fc_1 - xkeyboard-config=2.41=hd590300_0 - xorg-kbproto=1.0.7=h7f98852_1002 - xorg-libice=1.1.1=hd590300_0 - xorg-libsm=1.2.4=h7391055_0 - xorg-libx11=1.8.9=h8ee46fc_0 - xorg-libxau=1.0.11=hd590300_0 - xorg-libxdmcp=1.1.3=h7f98852_0 - xorg-libxext=1.3.4=h0b41bf4_2 - xorg-libxrender=0.9.11=hd590300_0 - xorg-renderproto=0.11.1=h7f98852_1002 - xorg-xextproto=7.3.0=h0b41bf4_1003 - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002 - xorg-xproto=7.0.31=h7f98852_1007 - xz=5.2.6=h166bdaf_0 - yaml=0.2.5=h7f98852_2 - zeromq=4.3.5=h75354e8_4 - zipp=3.17.0=pyhd8ed1ab_0 - zlib=1.2.13=hd590300_5 - zstd=1.5.6=ha6fb4c9_0 - pip: - stim<1.14 ```and the following settings:
The build works on the GitHub runner, but fails in the AWS runner with the following log: log.txt