Closed smangul1 closed 7 years ago
Please, explain what kind of flag. For the chain type? We have not discussed this yet, so why "still"....
I though we discussed long time agao Anyways just a flag= IGH,IGK, etc
right now the only way to extract certain chain is by grep which is not the best way just make field 2 to be this flag
Updated
Can you please report total number of reads mapped to CDR3 per chain besides unique CDR3
Also i still don't see the flag for chain type
Now it is hard to extract only CDR3 of certain type
Given the flag , we can do this
awk '{if($5=="IGH") print }'
Does it makes sense?