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mandricigor / imrep

ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
https://mandricigor.github.io/imrep/
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bug in output #2

Closed smangul1 closed 7 years ago

smangul1 commented 7 years ago

15537892/2/2 CSSTNKIKSKEYIMKKWLLAVLPATVLAAPPQGF TRAV26 NA TRAJ4,TRAJ35 NA IGLJ401:1:0,IGKJ401:3:1,IGKJ4*02:3:1 0 0 0

I am trying to understand ths one:

this is what i got 1.15537892/2/2 - read name 2.CSSTNKIKSKEYIMKKWLLAVLPATVLAAPPQGF - CDR3 3.TRAV26 -V 4.NA -D

  1. TRAJ4,TRAJ35 -J 6.NA - why this is NA?
  2. IGLJ401:1:0,IGKJ401:3:1,IGKJ4*02:3:1 - is it a bug? why IGK? 0 0 0
smangul1 commented 7 years ago

Did you check this? or maybe it is solved in new release?